Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 1.3e-241 839.3 438 100.0
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 1.0e-217 760.0 438 92.0
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 1.7e-209 732.6 438 88.4
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 2.8e-207 725.3 439 87.9
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 4.7e-199 698.0 436 85.1
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 1.2e-197 693.3 441 84.6
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 4.3e-192 674.9 451 80.7
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 2.8e-183 645.6 430 80.9
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 8.1e-183 644.0 436 80.3
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 1.1e-182 643.7 436 80.5
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 1.4e-182 643.3 436 80.3
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 3.1e-182 642.1 436 80.5
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 6.8e-182 641.0 436 80.3
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 1.0e-105 387.9 416 53.1
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 2.0e-104 383.6 434 53.2
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 1.3e-103 380.9 447 52.3
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 4.5e-101 372.5 370 55.9
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.1e-99 367.9 437 50.3
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 1.5e-99 367.5 438 50.5
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 1.6e-98 364.0 429 50.1
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 4.0e-97 359.4 440 50.5
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 4.0e-97 359.4 440 50.5
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 4.0e-97 359.4 403 51.4
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 2.8e-95 353.2 436 50.5
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 2.8e-95 353.2 440 48.4
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 2.8e-95 353.2 384 55.2
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.1e-94 351.3 440 48.0
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 1.1e-94 351.3 459 46.6
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 2.4e-94 350.1 440 48.2
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 5.9e-93 345.5 443 47.6
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 5.0e-92 342.4 450 46.2
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 8.6e-92 341.7 377 51.2
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 1.1e-91 341.3 449 49.7
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.5e-91 340.1 464 46.3
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 4.3e-91 339.3 434 48.6
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 1.6e-90 337.4 382 50.3
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 8.0e-90 335.1 432 48.6
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.4e-89 334.3 405 49.1
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 5.2e-89 332.4 419 47.7
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 8.9e-89 331.6 383 52.2
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 2.6e-88 330.1 438 46.3
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 3.4e-88 329.7 361 52.1
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.4e-86 324.3 373 48.8
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 1.9e-86 323.9 391 51.4
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.0e-85 320.5 361 49.9
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 2.0e-85 320.5 369 49.3
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 2.0e-85 320.5 430 45.1
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 2.7e-85 320.1 323 55.1
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 4.3e-83 312.8 454 43.2
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 9.5e-83 311.6 437 45.8
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 1.6e-82 310.8 428 45.8
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.1e-82 310.5 445 46.7
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 2.8e-82 310.1 448 43.3
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 3.6e-82 309.7 344 49.4
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 4.7e-82 309.3 336 50.9
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 1.8e-81 307.4 386 47.4
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 2.3e-81 307.0 440 44.3
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 6.8e-81 305.4 422 46.2
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 2.6e-80 303.5 382 45.0
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 2.6e-80 303.5 437 42.3
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 4.4e-80 302.8 456 42.8
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 1.3e-79 301.2 378 45.5
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 1.3e-79 301.2 439 44.2
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 1.3e-79 301.2 444 43.5
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 6.4e-79 298.9 439 43.7
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 4.1e-78 296.2 454 41.2
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 7.1e-78 295.4 387 47.0
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 1.2e-77 294.7 441 43.3
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 7.8e-77 292.0 468 40.4
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 8.6e-76 288.5 404 45.5
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 1.9e-75 287.3 386 44.0
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 4.3e-75 286.2 397 42.8
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 2.1e-74 283.9 365 44.7
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 5.2e-73 279.3 419 41.8
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 1.2e-72 278.1 296 53.4
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 2.0e-72 277.3 471 41.0
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 7.6e-72 275.4 221 62.4
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 3.7e-71 273.1 404 41.1
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 1.3e-68 264.6 447 41.2
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 1.7e-68 264.2 397 39.5
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 3.9e-68 263.1 342 47.7
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 7.3e-67 258.8 404 41.3
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 6.8e-65 252.3 371 42.6
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 5.4e-62 242.7 374 40.9
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 2.1e-58 230.7 437 36.2
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.4e-57 227.3 445 40.4
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.0e-56 224.2 444 40.3
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 2.4e-54 217.2 447 35.3
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.2e-53 214.9 366 40.2
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 7.9e-53 212.2 289 46.7
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 5.1e-52 209.5 444 37.2
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.6e-50 204.5 450 35.3
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 1.4e-49 201.4 351 38.2
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 1.2e-48 198.4 169 60.4
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.2e-47 194.1 163 60.7
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 8.4e-47 192.2 162 61.1
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 9.3e-46 188.7 465 32.5
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 3.0e-44 183.7 249 45.4
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 6.7e-44 182.6 273 42.1
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 5.6e-43 179.5 369 33.9
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.5e-40 171.4 367 33.8
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 1.0e-36 158.7 249 47.8
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 6.7e-36 156.0 122 66.4
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 3.4e-32 143.7 357 30.5
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.2e-29 135.2 86 81.4
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.0e-28 132.1 199 41.7
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.0e-28 130.6 200 40.5
BcaB03g16875 Brassica carinata HOM05D006262 ORTHO05D007266 5.1e-28 129.8 246 44.7
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.7e-21 107.5 187 36.4
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 6.1e-21 106.3 280 32.9
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 4.3e-19 100.1 74 67.6
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 6.9e-17 92.8 83 62.7
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 9.1e-17 92.4 76 57.9
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 4.5e-16 90.1 311 30.2
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 7.7e-16 89.4 286 29.4
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.0e-11 74.7 105 42.9
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 3.3e-11 73.9 76 50.0
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 8.2e-10 69.3 49 69.4
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.4e-09 68.6 46 71.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.1e-09 67.0 73 54.8
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 5.3e-09 66.6 70 55.7
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.5e-06 56.6 44 65.9


User provided reference genes

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