Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 2.3e-293 1011.5 532 100.0
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 8.1e-262 906.7 532 90.2
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 1.9e-234 815.8 529 82.2
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 6.1e-225 784.3 541 78.9
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 7.9e-225 783.9 543 78.8
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 1.9e-181 639.8 551 68.1
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 7.5e-175 617.8 572 66.4
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 1.9e-173 613.2 456 74.6
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 2.1e-172 609.8 536 69.2
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 7.8e-172 607.8 591 64.1
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 3.4e-143 512.7 477 67.1
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 1.3e-142 510.8 562 56.9
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 4.5e-111 406.0 541 47.5
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.2e-110 403.7 541 47.5
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 6.5e-110 402.1 541 47.3
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 8.5e-110 401.7 570 45.6
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 4.7e-108 396.0 553 46.7
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 1.8e-107 394.0 547 46.3
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 3.0e-107 393.3 542 45.6
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 2.0e-106 390.6 543 44.9
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 7.4e-106 388.7 546 45.2
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 1.7e-105 387.5 543 45.9
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 2.8e-105 386.7 554 45.5
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 4.8e-105 386.0 545 45.5
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 8.2e-105 385.2 566 45.4
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 2.4e-104 383.6 554 43.7
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 3.8e-102 376.3 537 44.1
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 8.5e-102 375.2 544 46.0
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.5e-101 372.5 549 44.8
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.5e-101 372.5 544 45.8
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 1.6e-100 370.9 557 44.3
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 4.0e-99 366.3 537 43.6
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 8.8e-99 365.2 539 44.2
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 4.4e-98 362.8 583 42.5
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 9.7e-98 361.7 552 44.7
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 1.4e-96 357.8 548 44.2
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 1.8e-96 357.5 547 44.4
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 9.1e-96 355.1 592 41.9
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.6e-95 354.4 592 41.9
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 3.5e-95 353.2 509 45.2
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 5.0e-94 349.4 548 42.2
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 2.5e-93 347.1 531 43.3
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 2.5e-93 347.1 599 40.9
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 5.5e-93 345.9 548 41.4
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 5.5e-93 345.9 537 41.7
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 1.2e-92 344.7 528 42.4
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 2.7e-92 343.6 597 40.7
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 3.0e-91 340.1 567 43.0
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 8.8e-91 338.6 546 42.9
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 1.2e-90 338.2 548 43.4
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 1.5e-90 337.8 538 42.6
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 4.4e-90 336.3 458 46.5
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 5.7e-90 335.9 545 42.2
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 3.7e-89 333.2 541 41.4
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 1.1e-88 331.6 606 38.4
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 5.4e-88 329.3 531 42.9
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.6e-87 327.8 543 40.9
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 2.7e-87 327.0 568 40.5
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 2.7e-87 327.0 545 41.1
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 1.1e-85 321.6 527 41.7
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 5.5e-85 319.3 539 39.7
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 1.4e-83 314.7 656 38.4
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 5.2e-83 312.8 598 39.8
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 5.2e-83 312.8 581 37.7
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 6.8e-83 312.4 530 38.7
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 4.4e-82 309.7 553 40.5
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 8.3e-81 305.4 613 38.5
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 1.8e-75 287.7 554 37.9
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 7.0e-72 275.8 545 36.0
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 9.2e-72 275.4 537 38.2
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 1.2e-71 275.0 527 38.3
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 2.5e-69 267.3 548 38.1
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 7.3e-69 265.8 541 36.0
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 1.3e-65 255.0 452 39.4
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 1.1e-64 251.9 449 39.6
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 1.1e-64 251.9 557 34.6
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 2.4e-64 250.8 381 44.6
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 7.0e-64 249.2 511 35.4
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 8.1e-60 235.7 451 38.8
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 1.3e-57 228.4 572 34.1
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 1.4e-51 208.4 473 34.0
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 4.2e-40 170.2 128 66.4
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 3.3e-37 160.6 449 29.2
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 5.6e-37 159.8 546 28.9
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 7.3e-37 159.5 402 33.1
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 7.4e-29 132.9 216 38.0
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 2.8e-28 131.0 410 31.7
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 3.1e-27 127.5 156 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 4.0e-27 127.1 447 29.3
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 4.6e-23 113.6 167 44.3
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 6.0e-23 113.2 556 25.0
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 1.8e-22 111.7 349 29.2
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.6e-20 105.1 168 41.1
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.6e-20 105.1 168 41.1
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 4.8e-20 103.6 355 29.3
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 4.9e-17 93.6 163 41.7
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 4.6e-15 87.0 74 59.5
MBI08_g05086_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 2.1e-07 61.6 51 60.8


User provided reference genes

Program Settings