Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.2e-153 546.6 289 100.0
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 8.9e-138 493.8 289 91.0
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.4e-137 491.9 289 90.7
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 2.7e-126 455.7 289 82.4
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 5.3e-114 414.8 289 76.5
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 1.2e-113 413.7 288 76.0
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 1.0e-109 400.6 289 75.1
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 1.0e-109 400.6 289 75.1
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 3.0e-109 399.1 289 74.0
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 4.3e-108 395.2 288 73.3
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 7.4e-108 394.4 289 72.3
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 9.6e-108 394.0 288 74.7
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 3.7e-107 392.1 288 72.6
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 4.2e-95 352.1 302 64.2
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 9.7e-84 314.3 279 60.6
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.0e-77 294.3 220 62.3
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 3.9e-77 292.4 275 55.3
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 6.7e-77 291.6 232 62.9
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 1.3e-75 287.3 232 62.9
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 1.3e-75 287.3 227 62.6
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.7e-75 287.0 284 58.5
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.7e-75 287.0 204 69.1
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 2.2e-75 286.6 283 56.2
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 2.2e-75 286.6 277 56.3
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 8.2e-75 284.6 207 64.7
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 8.2e-75 284.6 272 54.0
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.4e-74 283.9 236 61.4
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 2.4e-74 283.1 244 60.7
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.4e-74 283.1 205 64.4
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 3.1e-74 282.7 240 59.6
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 4.1e-74 282.3 205 64.4
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 1.2e-73 280.8 239 61.1
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 1.5e-73 280.4 283 56.9
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.0e-73 280.0 224 62.1
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 3.5e-73 279.3 205 63.9
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 4.5e-73 278.9 286 54.5
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 4.5e-73 278.9 231 61.9
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 5.9e-73 278.5 292 53.8
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.2e-72 276.6 231 61.9
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.8e-72 275.8 204 66.2
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.8e-72 275.8 204 65.7
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 3.8e-72 275.8 291 55.7
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 3.8e-72 275.8 213 61.0
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 6.5e-72 275.0 258 57.0
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.1e-71 274.2 229 58.5
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 1.4e-71 273.9 215 64.7
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 7.2e-71 271.6 207 63.8
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 9.4e-71 271.2 229 58.1
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 2.1e-70 270.0 270 53.3
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 2.7e-70 269.6 228 60.1
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.6e-70 269.2 245 58.4
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 3.6e-70 269.2 265 58.1
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 1.0e-69 267.7 231 59.3
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 6.7e-69 265.0 226 58.8
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 6.7e-69 265.0 282 51.1
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 1.1e-68 264.2 278 51.4
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 1.5e-68 263.8 213 61.0
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 1.5e-68 263.8 213 58.2
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 4.4e-68 262.3 217 59.9
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 7.4e-68 261.5 225 60.4
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 1.3e-67 260.8 255 54.5
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 1.3e-67 260.8 237 57.0
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 2.2e-67 260.0 184 66.3
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 2.2e-67 260.0 208 61.1
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 2.8e-67 259.6 232 56.5
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 3.7e-67 259.2 255 55.3
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 4.8e-67 258.8 275 52.0
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 2.4e-66 256.5 242 54.5
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 2.6e-65 253.1 254 53.1
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 7.7e-65 251.5 207 58.5
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.3e-64 250.8 210 57.1
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 2.9e-64 249.6 225 55.1
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 2.9e-64 249.6 209 57.4
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 2.9e-64 249.6 269 56.9
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 2.9e-64 249.6 215 59.1
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.8e-64 249.2 211 59.7
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 6.5e-64 248.4 280 50.7
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.9e-63 246.9 211 59.2
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 5.5e-63 245.4 174 66.1
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 9.4e-63 244.6 274 50.0
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 3.6e-62 242.7 178 68.0
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 8.0e-62 241.5 203 57.6
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 1.0e-61 241.1 205 57.1
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 5.2e-61 238.8 179 64.8
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 6.8e-61 238.4 293 49.1
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 2.0e-60 236.9 205 57.6
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 2.4e-58 229.9 216 52.3
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 3.1e-58 229.6 236 53.0
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 2.7e-57 226.5 181 63.5
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.9e-56 223.0 178 62.9
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 2.5e-55 219.9 185 61.1
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 3.2e-55 219.5 181 60.8
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 3.4e-52 209.5 263 47.9
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.7e-51 207.2 274 45.6
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 2.8e-51 206.5 200 51.5
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 1.6e-49 200.7 230 47.8
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 5.0e-48 195.7 205 50.2
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 3.3e-47 193.0 251 44.2
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.2e-46 191.0 259 40.5
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 4.0e-45 186.0 238 51.3
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.6e-44 183.3 174 54.0
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.7e-43 179.5 198 43.9
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 2.7e-41 173.3 195 47.2
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 2.9e-40 169.9 128 65.6
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 6.1e-38 162.2 191 49.7
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.0e-37 161.4 132 62.9
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 8.3e-35 151.8 260 39.2
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 8.3e-35 151.8 295 38.6
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.4e-34 151.0 222 41.4
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 1.9e-34 150.6 93 77.4
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 4.1e-34 149.4 93 77.4
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.6e-33 147.5 164 47.0
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 7.8e-33 145.2 85 75.3
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 7.3e-31 138.7 123 55.3
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.5e-28 131.0 222 38.3
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.2e-26 123.2 87 64.4
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 9.2e-26 121.7 166 43.4
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 4.6e-25 119.4 186 40.9
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 8.6e-24 115.2 82 63.4
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 7.3e-23 112.1 98 54.1
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.3e-19 101.3 197 44.2
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.2e-18 96.7 61 70.5
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 1.1e-15 88.2 60 68.3
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.5e-12 77.8 218 32.6
BcaC01g05263 Brassica carinata HOM05D006222 ORTHO05D007677 3.0e-08 63.5 42 78.6
C03p28590 Brassica napus HOM05D006222 ORTHO05D007677 9.6e-07 58.5 47 59.6
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 3.6e-06 56.6 51 51.0


User provided reference genes

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