Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 0.0e+00 1338.6 716 100.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.8e-304 1047.0 780 76.8
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.1e-218 763.8 743 63.1
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 8.9e-163 578.2 777 47.9
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 6.0e-159 565.5 781 48.4
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.9e-157 560.5 779 45.8
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.6e-156 557.4 776 47.2
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.1e-155 554.7 765 45.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 2.6e-154 550.1 737 48.8
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.9e-152 543.9 769 46.2
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.0e-146 523.9 727 47.0
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 2.3e-142 510.4 693 45.3
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.8e-139 500.7 673 45.5
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 3.1e-139 500.0 673 45.5
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.2e-138 498.0 676 44.8
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.2e-137 493.8 673 45.2
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 2.1e-119 434.1 649 42.4
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 6.3e-116 422.5 640 40.9
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.1e-115 421.8 640 40.8
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.4e-115 421.4 682 40.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 6.9e-115 419.1 640 40.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 2.0e-114 417.5 640 41.6
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.2e-106 391.7 660 39.4
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-106 391.7 606 40.6
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 5.9e-106 389.4 635 40.2
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 6.1e-103 379.4 562 43.4
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 7.9e-103 379.0 671 38.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.0e-102 378.6 759 37.2
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 5.7e-101 372.9 578 42.0
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 1.3e-100 371.7 647 39.7
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.7e-100 371.3 649 39.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.8e-99 367.9 603 38.8
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.5e-98 364.8 647 37.7
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.6e-98 364.0 573 40.7
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 4.5e-98 363.2 775 35.0
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 2.9e-97 360.5 626 38.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.5e-97 359.4 649 38.7
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.1e-96 358.6 627 36.4
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.4e-96 358.2 652 38.0
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.5e-96 357.5 666 36.3
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 3.2e-96 357.1 669 36.3
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.7e-95 354.0 691 38.1
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.9e-94 350.1 759 33.9
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 5.2e-94 349.7 658 36.5
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 2.6e-93 347.4 706 34.4
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.6e-93 347.4 748 34.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 3.7e-92 343.6 602 38.2
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 3.7e-92 343.6 796 33.4
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 4.8e-92 343.2 754 32.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 8.2e-92 342.4 722 33.9
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 8.2e-92 342.4 671 35.6
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.8e-91 341.3 769 34.5
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 4.1e-91 340.1 794 32.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.6e-90 338.2 632 37.5
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 5.9e-90 336.3 675 35.1
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 7.7e-90 335.9 638 36.8
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.0e-89 335.5 650 36.3
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.0e-89 335.5 624 38.0
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.3e-89 335.1 776 32.9
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.3e-89 335.1 630 39.0
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.3e-89 335.1 657 35.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 3.8e-89 333.6 697 35.9
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.0e-89 333.2 678 34.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 6.5e-89 332.8 636 37.1
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 6.5e-89 332.8 664 37.3
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.5e-88 331.6 731 34.3
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.9e-88 331.3 628 36.5
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.6e-87 328.2 673 36.7
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.6e-87 327.0 668 33.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 8.0e-87 325.9 601 36.8
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.8e-86 324.7 703 34.0
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 2.3e-86 324.3 618 36.6
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 4.0e-86 323.6 695 34.7
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 7.5e-85 319.3 700 33.3
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 3.5e-82 310.5 716 34.1
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.0e-81 308.9 733 33.2
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 5.0e-81 306.6 604 37.9
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.9e-80 304.7 717 32.8
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 3.6e-79 300.4 639 35.7
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 1.0e-78 298.9 633 34.6
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.0e-78 298.9 623 34.2
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.4e-78 298.5 661 34.2
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 4.0e-78 297.0 728 31.9
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.2e-77 295.4 741 32.3
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.1e-75 288.9 641 33.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 9.1e-75 285.8 804 30.3
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.6e-74 285.0 614 34.5
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.6e-74 285.0 672 33.9
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 4.5e-74 283.5 646 32.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 7.7e-74 282.7 607 32.1
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.3e-73 282.0 601 34.9
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.3e-70 271.2 596 32.2
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-70 271.2 606 30.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 4.4e-69 266.9 674 32.2
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 5.7e-69 266.5 727 31.2
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 7.5e-69 266.2 498 36.1
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-66 258.8 543 33.9
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.9e-65 254.2 676 32.0
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 6.6e-65 253.1 690 30.0
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 7.3e-64 249.6 667 30.9
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.1e-63 248.1 677 32.2
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 8.0e-63 246.1 847 27.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.4e-62 245.4 677 31.6
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 4.0e-62 243.8 749 28.8
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 7.5e-61 239.6 673 30.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 3.7e-60 237.3 676 30.3
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 8.3e-60 236.1 740 28.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 9.2e-59 232.6 707 28.0
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 5.2e-54 216.9 169 59.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 8.9e-54 216.1 590 29.0
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.0e-53 214.9 300 43.3
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.3e-52 212.2 808 26.0
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 6.4e-52 209.9 627 30.8
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.0e-51 206.5 642 30.2
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 9.2e-51 206.1 191 55.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.6e-50 205.3 820 25.4
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.3e-49 201.4 591 28.3
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.3e-49 201.4 268 43.7
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.9e-41 174.1 606 26.6
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 3.4e-37 161.0 273 35.5
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.1e-32 146.0 205 38.0
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.5e-32 144.8 270 34.4
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 4.3e-32 144.1 227 38.3
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.0e-30 136.3 149 47.7
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.5e-29 135.6 132 53.8
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 6.6e-25 120.2 133 50.4
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 4.3e-24 117.5 332 33.4
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.9e-19 102.1 137 47.4
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 4.6e-18 97.4 177 33.9
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.8e-17 95.5 413 27.8
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.1e-17 94.0 203 32.0
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 8.7e-17 93.2 155 44.5
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.1e-16 92.8 719 22.9
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.8e-15 88.2 272 29.4
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.0e-13 82.0 289 28.7
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 3.2e-11 74.7 170 30.0
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 7.9e-10 70.1 130 33.8
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.1e-08 66.2 76 46.1


User provided reference genes

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