Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 4.6e-61 237.7 115 100.0
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.6e-61 237.7 115 100.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.1e-59 233.0 115 97.4
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-59 232.6 115 96.5
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.3e-59 231.5 115 97.4
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.3e-59 231.5 115 96.5
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 4.7e-58 227.6 115 96.5
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 4.4e-56 221.1 115 94.8
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 7.6e-56 220.3 112 96.4
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.3e-55 219.5 115 92.2
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-55 219.2 112 95.5
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.2e-55 218.8 115 92.2
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.9e-55 217.6 117 90.6
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.9e-55 217.6 117 90.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 6.4e-55 217.2 115 92.2
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 8.4e-55 216.9 118 91.5
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 8.4e-55 216.9 114 95.6
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 8.4e-55 216.9 114 95.6
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.4e-54 216.1 113 92.0
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 4.2e-54 214.5 114 94.7
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-53 213.0 115 90.4
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.7e-53 211.8 115 89.6
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 3.5e-53 211.5 115 87.0
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 4.6e-53 211.1 115 89.6
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 4.6e-53 211.1 115 89.6
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 4.6e-53 211.1 115 89.6
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 7.8e-53 210.3 116 87.9
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.0e-52 209.9 115 88.7
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-52 208.4 107 94.4
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.0e-52 208.4 107 94.4
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.8e-49 199.1 115 84.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 9.0e-49 196.8 106 85.8
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 2.5e-43 178.7 113 76.1
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 7.3e-43 177.2 114 72.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.3e-42 176.4 116 72.4
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 2.1e-42 175.6 95 82.1
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.6e-42 174.9 92 83.7
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 8.1e-42 173.7 116 70.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.4e-41 172.2 108 74.1
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 5.3e-41 171.0 103 76.7
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.5e-40 169.5 115 70.4
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.5e-40 169.5 108 74.1
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.0e-40 169.1 118 68.6
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.6e-40 168.7 98 76.5
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.4e-40 168.3 118 70.3
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.4e-40 168.3 118 70.3
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 4.5e-40 167.9 117 68.4
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 4.5e-40 167.9 103 79.6
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 7.6e-40 167.2 103 75.7
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.6e-40 167.2 98 75.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 7.6e-40 167.2 98 75.5
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 7.6e-40 167.2 108 73.1
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 9.9e-40 166.8 98 75.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.3e-39 166.4 98 75.5
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.3e-39 166.4 119 67.2
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.3e-39 166.4 116 68.1
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.3e-39 166.4 96 78.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.7e-39 166.0 119 65.5
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.7e-39 166.0 103 75.7
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 3.8e-39 164.9 113 65.5
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 4.9e-39 164.5 115 67.8
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 4.9e-39 164.5 117 67.5
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 8.4e-39 163.7 117 65.0
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.1e-38 163.3 119 68.1
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.4e-38 162.9 114 68.4
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.4e-38 162.9 113 72.6
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 1.9e-38 162.5 116 68.1
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.4e-38 162.2 118 65.3
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 2.4e-38 162.2 112 66.1
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.4e-38 162.2 112 67.0
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.4e-38 162.2 98 73.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.2e-38 161.8 112 67.0
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 3.2e-38 161.8 104 72.1
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 4.2e-38 161.4 114 67.5
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 4.2e-38 161.4 103 71.8
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.2e-38 161.4 101 74.3
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 4.2e-38 161.4 85 82.4
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 4.2e-38 161.4 85 82.4
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.1e-38 160.6 95 77.9
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 9.3e-38 160.2 116 64.7
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.2e-37 159.8 103 73.8
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.2e-37 159.8 103 72.8
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.2e-37 159.8 119 65.5
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.6e-37 159.5 115 67.0
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.6e-37 159.5 92 78.3
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.6e-37 159.5 107 71.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 2.1e-37 159.1 112 65.2
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.1e-37 159.1 113 69.0
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.1e-37 159.1 101 72.3
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 2.7e-37 158.7 103 72.8
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 2.7e-37 158.7 102 74.5
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 4.6e-37 157.9 118 65.3
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 6.0e-37 157.5 105 70.5
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 7.9e-37 157.1 111 66.7
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 7.9e-37 157.1 111 66.7
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.0e-36 156.8 118 62.7
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.8e-36 156.0 93 73.1
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 3.0e-36 155.2 107 71.0
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 5.1e-36 154.5 113 63.7
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.1e-36 154.5 110 67.3
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 5.1e-36 154.5 111 66.7
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.7e-36 154.1 107 65.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 8.7e-36 153.7 107 65.4
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 8.7e-36 153.7 102 69.6
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.1e-35 153.3 119 65.5
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.1e-35 153.3 117 61.5
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.5e-35 152.9 102 69.6
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 92 72.8
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.9e-35 152.5 86 76.7
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.9e-35 152.5 111 66.7
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.5e-35 152.1 118 61.9
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 2.5e-35 152.1 118 65.3
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 2.5e-35 152.1 106 67.9
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.3e-35 151.8 117 61.5
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.6e-35 151.0 118 63.6
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.4e-35 150.6 113 64.6
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 7.4e-35 150.6 108 67.6
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 9.6e-35 150.2 116 62.1
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 9.6e-35 150.2 112 60.7
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.3e-34 149.8 107 65.4
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-34 149.8 107 65.4
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.6e-34 149.4 110 64.5
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 3.7e-34 148.3 105 66.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 3.7e-34 148.3 83 79.5
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 6.2e-34 147.5 107 63.6
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.1e-34 147.1 115 61.7
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.1e-33 146.7 117 60.7
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.1e-33 146.7 105 65.7
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.1e-33 146.7 105 65.7
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.4e-33 146.4 78 78.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 5.3e-33 144.4 104 63.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 6.9e-33 144.1 117 59.0
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 9.0e-33 143.7 101 66.3
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.2e-32 143.3 77 79.2
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.2e-32 143.3 80 76.2
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.6e-32 142.1 115 60.0
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.9e-31 138.7 88 69.3
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.0e-29 131.0 120 55.8
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.0e-28 130.2 83 65.1
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 3.9e-28 128.3 82 73.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 2.5e-27 125.6 67 91.0
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 3.3e-27 125.2 84 61.9
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.3e-23 113.2 78 65.4
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.1e-21 105.9 113 57.5
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.1e-21 105.9 78 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.0e-20 103.6 78 61.5
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 3.0e-20 102.1 106 46.2
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.1e-19 100.1 82 56.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-19 99.8 70 72.9
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 4.8e-18 94.7 61 73.8
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.4e-17 93.2 61 70.5
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 3.4e-16 88.6 109 45.0
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 7.2e-14 80.9 73 49.3
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 8.8e-12 73.9 71 49.3
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 7.4e-11 70.9 64 51.6
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 2.0e-08 62.8 56 55.4
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.5e-08 61.6 47 61.7


User provided reference genes

Program Settings