Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.0e-141 505.8 260 100.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.5e-133 478.4 260 94.6
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.4e-128 461.5 260 92.3
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.7e-124 449.5 262 90.5
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 8.9e-121 437.2 260 86.9
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.0e-108 397.1 260 81.5
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-82 309.7 263 68.1
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 2.1e-82 309.7 263 68.1
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.1e-81 305.8 264 68.2
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.1e-81 305.8 264 68.2
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 3.4e-80 302.4 264 67.0
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.2e-79 299.7 261 64.0
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 5.5e-78 295.0 263 66.9
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.0e-77 291.6 263 65.4
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.7e-76 288.1 263 62.0
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.7e-76 288.1 266 62.0
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 3.3e-75 285.8 262 67.9
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.1e-73 279.3 262 64.1
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 5.3e-73 278.5 267 62.9
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 5.3e-73 278.5 264 62.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 4.3e-67 258.8 263 60.1
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 5.9e-64 248.4 201 71.1
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.7e-63 246.9 267 56.2
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.7e-63 246.9 268 57.5
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.2e-62 242.7 268 55.2
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.4e-62 241.1 266 54.9
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.6e-61 240.4 266 55.6
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-61 240.4 270 56.7
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 7.9e-61 238.0 265 55.8
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.0e-60 237.7 271 53.9
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-60 236.9 267 56.2
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 5.1e-60 235.3 122 97.5
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 3.1e-57 226.1 266 54.5
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 4.1e-57 225.7 265 54.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 5.3e-57 225.3 283 51.2
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.4e-56 222.6 265 54.0
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 5.9e-56 221.9 270 54.4
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 7.7e-56 221.5 269 51.3
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.3e-55 220.7 271 52.4
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.9e-54 216.9 290 50.3
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 3.6e-53 212.6 265 53.6
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.0e-52 211.1 266 54.1
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.0e-52 211.1 264 52.3
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.8e-52 210.3 263 52.5
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 5.2e-52 208.8 266 49.6
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 5.2e-52 208.8 262 48.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 5.2e-52 208.8 265 50.6
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 5.2e-52 208.8 270 51.9
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 8.8e-52 208.0 286 48.3
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.5e-51 207.2 267 51.7
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.3e-51 206.1 264 50.8
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 5.7e-51 205.3 268 50.7
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 9.7e-51 204.5 262 50.8
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 9.7e-51 204.5 262 51.1
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.3e-50 204.1 263 50.6
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.7e-50 203.8 263 50.6
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.8e-50 203.0 264 50.8
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.1e-49 201.1 269 49.1
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.8e-49 200.3 266 50.0
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.4e-49 199.9 263 47.5
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.4e-49 199.9 263 51.0
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 3.1e-49 199.5 269 49.1
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 3.1e-49 199.5 269 49.4
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 7.0e-49 198.4 263 49.0
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.2e-48 197.6 283 45.9
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.5e-48 195.7 165 64.8
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 4.5e-48 195.7 261 48.3
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 4.5e-48 195.7 268 52.2
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.9e-48 195.3 269 50.2
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.0e-47 194.5 264 50.4
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.0e-47 194.5 314 43.3
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.3e-47 194.1 266 50.0
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.7e-47 193.7 269 52.4
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 4.2e-46 189.1 276 46.7
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.5e-46 188.7 264 49.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 5.5e-46 188.7 264 49.6
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 5.5e-46 188.7 267 45.3
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.6e-45 187.2 269 51.7
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 2.1e-45 186.8 245 51.0
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 2.1e-45 186.8 263 49.4
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 6.1e-45 185.3 272 46.7
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.0e-44 184.5 275 46.9
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.4e-44 184.1 209 54.5
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.4e-44 184.1 272 47.1
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.8e-44 183.7 235 50.2
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 2.3e-44 183.3 261 47.5
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.0e-44 183.0 227 51.5
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.0e-44 183.0 268 47.0
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 4.0e-44 182.6 271 48.3
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 4.0e-44 182.6 262 48.1
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 7.5e-43 178.3 268 45.9
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.2e-42 176.8 268 45.9
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 2.8e-42 176.4 280 46.4
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 4.8e-42 175.6 261 46.4
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-41 174.5 189 55.6
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 3.1e-41 172.9 261 44.1
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-41 172.9 261 44.1
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.1e-41 172.9 271 42.4
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.0e-40 170.2 262 45.0
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.7e-40 169.9 261 44.1
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.9e-40 168.7 261 43.7
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.9e-40 168.7 265 46.0
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.9e-40 168.7 265 46.0
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.7e-40 168.3 189 54.5
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 1.7e-39 167.2 263 46.8
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.7e-39 167.2 278 45.3
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.9e-39 166.4 262 46.6
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.8e-39 166.0 264 47.0
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.8e-39 166.0 264 47.0
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 5.0e-39 165.6 265 43.4
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.5e-38 164.1 269 45.7
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.2e-38 162.9 258 45.7
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 5.5e-38 162.2 277 42.2
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 5.5e-38 162.2 273 41.8
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 5.5e-38 162.2 263 46.0
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 9.4e-38 161.4 274 44.5
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 9.4e-38 161.4 263 44.9
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.2e-37 161.0 193 47.7
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.6e-37 159.5 262 42.7
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 4.7e-37 159.1 267 42.3
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 8.0e-37 158.3 315 40.6
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 2.3e-36 156.8 242 46.3
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.3e-36 156.8 246 44.7
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.0e-36 156.4 262 45.4
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.0e-36 156.0 262 45.4
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.8e-36 155.2 266 43.6
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 2.0e-35 153.7 269 45.7
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 4.4e-35 152.5 197 49.2
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.7e-34 150.6 268 42.9
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 2.8e-34 149.8 268 39.9
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 3.7e-34 149.4 262 43.1
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 3.7e-34 149.4 269 43.1
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 9.1e-33 144.8 262 43.1
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.0e-32 143.7 265 41.1
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 4.5e-32 142.5 254 42.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 7.7e-32 141.7 180 49.4
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.0e-31 141.4 178 51.7
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.3e-31 140.2 177 51.4
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 2.9e-31 139.8 263 44.1
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.9e-31 139.8 255 41.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 3.8e-31 139.4 273 41.0
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 3.3e-30 136.3 265 41.5
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 8.0e-29 131.7 262 40.5
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-28 131.0 261 39.1
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 6.8e-28 128.6 268 39.9
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.2e-27 127.9 177 49.2
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.5e-27 127.5 181 49.2
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 2.6e-27 126.7 187 46.0
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 4.9e-26 122.5 262 41.2
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.3e-26 121.7 280 36.4
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.1e-25 121.3 262 37.4
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.1e-25 119.8 161 49.1
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.4e-25 119.0 261 37.5
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.2e-24 117.9 252 38.5
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.6e-24 117.5 99 72.7
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 2.0e-24 117.1 143 47.6
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.5e-24 116.3 263 34.6
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 6.6e-23 112.1 262 37.0
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.6e-21 106.3 264 37.1
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-20 104.4 264 36.7
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.0e-20 103.2 261 33.0
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 2.6e-19 100.1 127 48.8
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.4e-19 99.8 261 33.3
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 7.5e-19 98.6 367 29.4
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 4.9e-18 95.9 264 31.8
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-17 94.4 164 39.6
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.5e-16 89.7 96 54.2
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.1e-14 84.7 253 32.0
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 9.5e-14 81.6 95 49.5
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 6.2e-13 79.0 127 41.7
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 8.0e-13 78.6 213 35.7
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.4e-12 77.8 64 68.8
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.8e-12 77.4 117 38.5
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.0e-11 73.9 54 70.4
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 5.8e-11 72.4 78 52.6
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.3e-10 71.2 74 52.7
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.3e-10 71.2 103 46.6
C03p27190 Brassica napus HOM05D003503 ORTHO05D003885 3.7e-10 69.7 123 39.0
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 5.4e-09 65.9 161 37.3
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.2e-08 64.7 230 32.2
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.1e-08 63.9 84 48.8
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 2.7e-08 63.5 220 31.4
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 4.6e-08 62.8 203 31.0
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.0e-07 61.6 85 47.1
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 8.6e-07 58.5 197 29.9
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 2.5e-06 57.0 214 30.4
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 7.3e-06 55.5 196 27.0


User provided reference genes

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