Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 6.3e-85 317.4 160 100.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 4.1e-84 314.7 160 98.8
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.2e-83 313.2 160 97.5
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.8e-82 308.1 160 95.6
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 6.6e-82 307.4 160 95.0
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 8.6e-82 307.0 160 95.6
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.8e-79 299.3 161 93.2
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.8e-79 299.3 161 93.2
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-79 299.3 161 93.2
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-79 299.3 161 93.2
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 5.2e-79 297.7 161 92.5
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 8.9e-79 297.0 161 92.5
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 4.4e-78 294.7 161 91.9
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 4.4e-78 294.7 161 91.9
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 4.4e-78 294.7 161 91.9
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-77 292.4 158 92.4
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.8e-77 292.0 160 88.1
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 4.9e-77 291.2 158 91.8
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.3e-77 290.8 160 87.5
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 8.3e-77 290.4 160 87.5
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 5.4e-76 287.7 160 86.2
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.2e-75 286.6 160 88.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 3.2e-68 261.9 154 81.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 5.4e-68 261.2 160 78.1
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 9.2e-68 260.4 160 76.9
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-68 260.4 160 76.9
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-68 260.4 160 76.9
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-68 260.4 160 76.9
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-68 260.4 160 76.9
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-68 260.4 160 76.9
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 3.5e-67 258.5 160 77.5
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 4.6e-67 258.1 158 77.2
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 4.6e-67 258.1 154 79.9
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 7.8e-67 257.3 160 76.2
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.0e-66 256.9 158 77.8
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.0e-66 256.9 158 77.2
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.3e-66 255.8 160 76.2
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 2.3e-66 255.8 158 76.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 2.3e-66 255.8 160 75.6
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 3.9e-66 255.0 154 77.9
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.5e-65 252.3 160 74.4
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 3.3e-65 251.9 158 77.2
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 3.3e-65 251.9 158 76.6
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.3e-65 251.9 160 74.4
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.6e-65 251.1 160 74.4
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.6e-65 251.1 160 74.4
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.2e-64 250.0 154 75.3
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.2e-64 250.0 160 74.4
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 75.0
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.1e-64 249.2 154 77.3
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 3.6e-64 248.4 160 71.9
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.6e-64 248.4 157 75.2
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.6e-64 248.4 155 76.8
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.7e-64 248.1 143 83.9
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 74.7
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.3e-63 245.7 160 73.8
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 2.3e-63 245.7 158 72.8
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 3.1e-63 245.4 157 73.9
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.1e-63 245.4 154 72.7
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 5.2e-63 244.6 160 73.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 5.2e-63 244.6 157 75.2
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 6.8e-63 244.2 160 71.2
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.9e-63 243.8 157 72.6
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 8.9e-63 243.8 159 73.0
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.5e-62 243.0 154 73.4
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 2.0e-62 242.7 158 74.7
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 72.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.0e-62 242.7 160 71.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 75.3
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 75.3
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 72.7
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.6e-62 242.3 153 73.2
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.6e-62 242.3 153 73.2
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.6e-62 242.3 157 74.5
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 4.4e-62 241.5 157 72.6
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 5.8e-62 241.1 154 75.3
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 5.8e-62 241.1 160 73.1
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.8e-62 241.1 160 72.5
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 5.8e-62 241.1 160 70.6
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 7.5e-62 240.7 158 72.2
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 7.5e-62 240.7 157 74.5
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 9.8e-62 240.4 158 72.8
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 9.8e-62 240.4 154 74.7
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.3e-61 240.0 154 72.7
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.3e-61 240.0 160 70.0
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.7e-61 239.6 158 71.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.7e-61 239.6 157 74.5
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.2e-61 239.2 155 74.8
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.2e-61 239.2 157 74.5
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 3.7e-61 238.4 158 70.9
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.2e-60 235.3 154 70.8
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 5.4e-60 234.6 154 72.1
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 7.0e-60 234.2 154 73.4
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.2e-59 233.4 160 71.2
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 4.6e-59 231.5 155 69.7
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 6.0e-59 231.1 160 69.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 7.8e-59 230.7 157 70.1
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.0e-58 230.3 154 72.1
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 5.1e-58 228.0 159 71.1
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 5.1e-58 228.0 159 71.1
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 6.6e-58 227.6 153 68.0
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 6.6e-58 227.6 157 70.1
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.6e-58 227.3 138 78.3
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 8.6e-58 227.3 160 70.0
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.5e-57 226.5 160 68.1
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 2.5e-57 225.7 160 68.8
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 3.3e-57 225.3 160 68.8
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 9.5e-57 223.8 154 68.2
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 2.8e-56 222.2 160 67.5
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 6.2e-56 221.1 209 55.5
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.2e-54 216.9 144 73.6
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.5e-54 216.5 154 68.2
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.6e-54 215.7 135 76.3
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 3.4e-54 215.3 156 63.5
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.9e-53 212.2 144 70.1
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.4e-52 209.9 248 48.0
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 5.4e-52 208.0 144 67.4
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.2e-51 206.8 125 78.4
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.8e-51 204.1 161 65.2
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.8e-48 195.7 122 77.9
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.1e-47 192.2 162 59.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 5.8e-46 188.0 209 47.8
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 9.9e-46 187.2 158 57.6
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.2e-44 182.2 110 77.3
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 5.4e-44 181.4 101 92.1
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.6e-43 179.9 124 70.2
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 5.1e-42 174.9 301 37.2
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 5.6e-41 171.4 133 66.2
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 7.3e-41 171.0 187 48.7
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.2e-37 159.5 144 59.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 6.0e-35 151.4 146 63.7
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 8.7e-34 147.5 154 48.1
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-33 146.7 77 88.3
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 5.6e-33 144.8 98 72.4
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.6e-32 143.3 149 49.7
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.6e-32 142.1 149 49.0
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.2e-32 141.4 147 55.1
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.4e-31 140.2 113 62.8
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.8e-30 134.8 152 46.1
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-28 128.6 85 72.9
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.3e-25 119.0 146 43.8
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-24 116.7 78 76.9
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-24 116.7 101 68.3
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 6.9e-23 111.3 126 43.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.9e-22 107.5 72 70.8
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.9e-22 107.5 72 70.8
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-21 106.3 65 75.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.9e-21 105.9 65 75.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 5.5e-20 101.7 64 75.0
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.9e-19 97.8 64 71.9
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.9e-17 93.2 127 39.4
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 3.0e-10 69.3 146 33.6
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 8.7e-10 67.8 96 42.7
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 7.4e-09 64.7 149 28.9
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 8.2e-08 61.2 45 64.4
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.4e-07 59.7 45 62.2


User provided reference genes

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