Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.0e-86 320.9 167 100.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.6e-62 241.5 167 80.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.3e-61 239.2 171 79.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.6e-57 224.2 169 74.6
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.8e-51 205.7 171 71.3
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-51 205.7 170 71.8
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.2e-51 204.5 171 70.8
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-50 203.8 171 70.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-50 202.6 170 71.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 3.1e-50 202.2 170 70.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-38 163.7 179 57.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.8e-37 159.8 179 55.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 6.7e-37 157.9 179 54.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-36 156.0 183 53.6
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.3e-36 155.6 182 53.3
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-35 153.7 165 58.2
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 3.7e-35 152.1 193 52.3
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.1e-34 148.7 189 52.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 5.3e-34 148.3 182 52.7
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 6.9e-34 147.9 182 52.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.5e-33 146.7 199 50.8
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.5e-33 145.2 189 51.3
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 3.8e-32 142.1 186 51.6
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.5e-32 141.4 166 54.8
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-31 140.6 180 53.9
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-31 138.3 165 52.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-30 136.3 161 51.6
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.1e-30 134.8 168 52.4
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-29 133.3 165 53.3
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 5.1e-29 131.7 182 47.3
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 8.8e-29 131.0 162 51.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.7e-28 128.3 175 50.3
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 4.1e-26 122.1 185 49.2
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 6.7e-21 104.8 193 41.5
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 5.7e-20 101.7 187 42.2
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.8e-19 99.4 195 40.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.7e-19 99.0 188 40.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.7e-19 99.0 190 41.1
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 4.8e-19 98.6 194 39.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.8e-19 98.6 188 40.4
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.3e-19 98.2 189 39.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.3e-19 98.2 192 41.1
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.4e-18 97.1 191 39.3
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.4e-18 97.1 178 39.9
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.4e-18 97.1 185 41.6
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.8e-18 96.7 196 40.3
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-18 96.3 188 40.4
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.4e-18 96.3 183 40.4
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.4e-18 96.3 193 40.4
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.1e-18 95.9 191 38.7
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.2e-17 94.0 195 40.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-17 94.0 188 39.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-17 94.0 186 40.3
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.6e-17 93.6 193 37.3
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.0e-17 93.2 192 38.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.6e-17 92.8 182 37.4
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.5e-17 92.4 186 39.8
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 4.5e-17 92.0 188 40.4
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.5e-17 92.0 186 40.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 7.7e-17 91.3 182 40.1
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.0e-16 90.9 180 39.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.0e-16 90.9 128 50.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.3e-16 90.5 177 38.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.7e-16 90.1 193 38.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.7e-16 90.1 187 39.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.7e-16 90.1 192 38.0
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.2e-16 89.7 196 34.7
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.9e-16 89.4 202 33.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 2.9e-16 89.4 188 39.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 3.8e-16 89.0 189 38.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.5e-16 88.2 198 39.9
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.5e-16 87.8 189 39.7
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.1e-15 87.4 188 37.8
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.5e-15 87.0 192 37.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.5e-15 87.0 183 38.8
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.5e-15 86.3 188 37.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.5e-15 86.3 171 41.5
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.5e-15 86.3 180 38.9
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 4.2e-15 85.5 181 38.1
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 4.2e-15 85.5 185 36.2
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 5.5e-15 85.1 186 38.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 9.4e-15 84.3 194 37.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.2e-14 84.0 78 55.1
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.2e-14 84.0 195 37.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-14 84.0 168 41.1
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-14 84.0 168 41.1
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.2e-14 84.0 178 39.9
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.6e-14 83.6 196 36.2
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.6e-14 83.6 189 36.0
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.1e-14 83.2 192 34.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.1e-14 83.2 191 37.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.1e-14 83.2 196 36.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 2.1e-14 83.2 190 38.4
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.7e-14 82.8 183 37.2
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.6e-14 82.4 149 40.9
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.6e-14 82.4 178 37.6
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 3.6e-14 82.4 198 37.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.6e-14 82.4 198 37.4
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.6e-14 82.4 198 37.4
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 4.7e-14 82.0 172 39.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.1e-14 81.6 200 38.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 6.1e-14 81.6 188 35.1
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-13 80.5 216 34.7
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.4e-13 80.5 202 33.2
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.8e-13 80.1 186 35.5
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.8e-13 80.1 180 36.1
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.8e-13 80.1 156 39.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.3e-13 79.7 179 40.8
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.3e-13 79.7 200 34.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.3e-13 79.7 199 36.7
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.3e-13 79.7 188 36.7
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.3e-13 79.7 182 36.3
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.3e-13 79.7 181 35.9
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.3e-13 79.7 176 35.8
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-13 79.3 195 35.4
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.0e-13 79.3 152 41.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 3.0e-13 79.3 184 38.0
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.0e-13 79.3 184 33.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 3.0e-13 79.3 192 37.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.2e-13 78.6 199 36.2
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 5.2e-13 78.6 178 34.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.2e-12 77.4 176 37.5
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.5e-12 77.0 206 33.0
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.0e-12 76.6 195 37.4
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.6e-12 76.3 191 32.5
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.6e-12 76.3 189 33.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.6e-12 76.3 175 38.9
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.6e-12 76.3 165 38.8
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.3e-12 75.9 192 31.8
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.3e-12 75.9 181 35.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-12 75.9 185 36.8
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 3.3e-12 75.9 185 36.8
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.3e-12 75.9 181 37.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.3e-12 75.9 193 35.8
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.4e-12 75.5 177 39.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.4e-12 75.5 150 34.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.4e-12 75.5 190 34.7
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.7e-12 75.1 181 37.6
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 5.7e-12 75.1 188 34.0
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 7.5e-12 74.7 196 36.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.5e-12 74.7 192 34.4
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 9.7e-12 74.3 188 34.6
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.3e-11 73.9 177 37.3
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.3e-11 73.9 178 37.1
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.2e-11 73.2 78 51.3
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.8e-11 72.8 76 48.7
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.8e-11 72.8 188 38.3
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.8e-11 72.8 187 35.8
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.7e-11 72.4 214 34.6
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.7e-11 72.4 174 37.9
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 4.8e-11 72.0 172 35.5
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.3e-11 71.6 196 32.7
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.1e-10 70.9 186 32.8
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.4e-10 70.5 154 36.4
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-10 70.1 75 52.0
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.8e-10 70.1 173 34.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.4e-10 69.7 194 35.1
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.1e-10 69.3 177 35.6
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.1e-10 68.9 66 56.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.1e-10 68.9 73 50.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 4.1e-10 68.9 124 43.5
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 7.0e-10 68.2 195 33.3
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-09 66.2 192 32.8
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.7e-09 66.2 192 32.8
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.7e-09 66.2 193 35.8
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 3.5e-09 65.9 193 32.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.5e-09 65.9 76 51.3
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 4.5e-09 65.5 179 33.0
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.9e-09 65.1 180 32.2
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.7e-08 63.5 72 51.4
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 3.8e-08 62.4 77 46.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 6.5e-08 61.6 77 45.5
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.1e-07 60.8 185 31.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.9e-07 60.1 66 51.5
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-07 60.1 76 46.1
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 2.5e-07 59.7 38 76.3
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.5e-07 59.7 69 47.8
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.5e-07 59.7 107 40.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.6e-06 55.8 160 34.4
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.6e-06 55.8 184 30.4


User provided reference genes

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