Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.5e-161 571.6 300 100.0
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 8.3e-155 550.4 300 95.7
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-143 513.5 300 89.3
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.6e-143 511.1 300 89.0
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.6e-140 500.7 301 89.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 9.9e-140 500.4 295 89.2
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.9e-131 472.2 298 85.2
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 6.4e-131 471.1 299 84.9
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 6.4e-131 471.1 299 84.9
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 7.1e-130 467.6 296 84.8
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 7.9e-129 464.2 299 83.3
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.1e-125 453.8 306 80.4
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.3e-125 451.4 303 81.2
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 7.1e-122 441.0 311 76.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.1e-117 427.2 303 74.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.2e-115 419.5 312 74.0
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 4.9e-115 418.3 311 73.0
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 8.4e-115 417.5 304 74.0
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.1e-114 417.2 313 73.5
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.9e-111 406.4 297 73.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.3e-111 405.6 311 71.1
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.7e-111 404.8 303 72.9
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.3e-110 403.7 303 72.9
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-109 400.2 306 71.9
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.4e-109 400.2 306 71.9
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-108 397.1 306 71.6
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 5.0e-107 391.7 304 70.4
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 5.0e-107 391.7 263 74.9
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.5e-106 389.4 303 66.3
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.5e-106 389.4 263 74.1
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.5e-105 385.6 305 67.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 3.5e-105 385.6 305 67.2
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 6.1e-105 384.8 302 67.5
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 6.1e-105 384.8 305 66.9
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.8e-104 383.3 309 66.3
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.3e-104 382.9 314 66.6
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 6.7e-104 381.3 308 65.6
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 8.7e-104 380.9 284 70.8
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.1e-103 380.6 312 65.7
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.5e-103 380.2 259 74.5
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.9e-103 379.8 303 66.0
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.9e-103 379.8 261 74.3
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.3e-102 377.1 306 64.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.6e-102 376.7 301 65.1
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 3.7e-102 375.6 290 68.6
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.8e-102 375.2 305 66.9
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.1e-101 374.0 284 68.3
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.1e-101 374.0 309 65.4
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.4e-101 373.6 284 68.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 5.3e-101 371.7 300 66.0
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 5.3e-101 371.7 257 73.9
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.2e-100 370.5 303 66.3
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.5e-100 370.2 256 73.4
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.6e-100 369.4 310 62.9
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.4e-100 369.0 259 72.2
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 3.4e-100 369.0 327 63.3
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.0e-99 367.5 284 65.8
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.0e-99 367.5 309 63.4
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.3e-99 367.1 313 64.2
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 3.8e-99 365.5 314 62.4
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 3.8e-99 365.5 301 64.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 3.8e-99 365.5 259 73.4
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 5.0e-99 365.2 260 71.9
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.2e-97 360.5 258 71.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.2e-97 360.5 301 65.1
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.6e-97 360.1 258 72.1
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.6e-97 360.1 290 66.2
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 4.6e-97 358.6 278 67.6
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.4e-96 357.1 302 65.2
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.8e-96 356.7 302 64.2
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 3.9e-96 355.5 289 65.7
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 5.1e-96 355.1 247 73.3
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.1e-95 354.0 291 66.0
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 2.0e-95 353.2 262 67.2
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 9.7e-95 350.9 265 69.4
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 9.7e-95 350.9 256 68.8
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.7e-94 349.0 254 72.0
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 4.8e-94 348.6 295 63.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 8.2e-94 347.8 276 66.3
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 8.2e-94 347.8 295 65.8
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.4e-93 347.1 315 60.6
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.8e-93 346.7 262 67.2
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.8e-93 346.7 252 70.2
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.4e-93 346.3 300 61.3
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.1e-93 345.9 267 67.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.1e-93 345.9 267 67.4
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.2e-92 344.0 252 68.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 2.0e-92 343.2 259 67.2
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 2.6e-92 342.8 262 67.2
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.0e-91 340.9 256 68.0
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.8e-91 339.0 364 53.0
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.5e-90 336.3 282 62.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 5.5e-90 335.1 257 67.3
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.2e-90 334.7 236 71.6
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 7.2e-90 334.7 269 63.9
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 2.1e-89 333.2 263 66.2
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.1e-89 333.2 269 63.6
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 7.9e-89 331.3 236 69.9
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.3e-88 329.7 275 65.1
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.5e-87 327.0 315 57.5
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.3e-87 325.9 304 57.6
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.7e-87 325.1 290 61.0
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.7e-87 325.1 262 67.2
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 7.4e-87 324.7 299 58.5
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 8.2e-86 321.2 222 70.7
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.1e-85 320.9 261 64.4
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 3.1e-85 319.3 212 76.9
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.1e-85 319.3 253 62.8
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 5.3e-85 318.5 249 63.1
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 7.7e-84 314.7 289 60.2
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.7e-83 313.5 246 64.6
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.9e-83 312.8 303 56.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.1e-82 310.8 270 62.2
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.9e-82 310.1 334 54.8
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 4.2e-82 308.9 236 65.3
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.5e-82 308.5 332 54.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 6.1e-81 305.1 285 56.8
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.0e-80 304.3 309 55.0
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.3e-80 303.1 350 49.7
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.0e-80 302.4 278 59.0
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.0e-80 302.4 285 56.1
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 6.7e-80 301.6 225 69.8
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.5e-79 300.4 252 63.1
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.3e-78 297.4 259 62.5
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.8e-78 296.2 243 63.4
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.7e-76 289.7 239 60.7
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.5e-76 289.3 239 64.9
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 7.2e-74 281.6 221 61.5
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.1e-73 280.0 297 50.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-71 274.2 222 66.2
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.8e-70 268.9 265 58.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 9.1e-69 264.6 267 56.6
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 7.7e-68 261.5 226 61.1
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.9e-62 242.3 252 47.2
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.9e-62 242.3 255 49.0
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 5.6e-58 228.8 172 65.1
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 9.5e-58 228.0 401 38.7
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.1e-57 226.9 192 65.6
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 5.2e-56 222.2 237 48.5
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.4e-53 213.4 220 55.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.0e-51 208.0 239 44.4
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.5e-50 204.1 256 47.7
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.8e-49 199.9 131 74.8
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.2e-46 190.3 136 68.4
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 6.0e-44 182.2 172 51.7
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 3.0e-35 153.3 123 63.4
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.1e-29 134.8 118 55.9
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.1e-21 108.2 79 69.6
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 7.1e-21 105.5 67 80.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 4.6e-20 102.8 107 49.5
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.7e-14 84.3 70 55.7
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.2e-14 84.0 188 35.6
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 3.2e-13 80.1 69 58.0
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.3e-10 70.1 72 52.8
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 5.6e-10 69.3 52 65.4
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 5.3e-08 62.8 50 64.0
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.5e-07 61.2 106 35.8
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 4.5e-07 59.7 106 34.9
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.9e-06 56.2 210 25.7
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.9e-06 56.2 203 25.1


User provided reference genes

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