Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.7e-260 902.1 441 100.0
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.3e-252 875.9 442 96.8
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 3.7e-244 847.8 438 93.2
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.3e-241 839.3 438 92.0
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 4.2e-240 834.3 438 93.2
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 3.4e-237 824.7 438 90.6
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 5.7e-237 823.9 438 90.6
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 1.8e-235 818.9 438 90.0
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 4.1e-235 817.8 439 90.0
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 2.7e-234 815.1 438 89.7
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 6.6e-233 810.4 439 89.5
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 2.0e-229 798.9 447 86.4
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 2.7e-226 788.5 438 85.4
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 5.1e-217 757.7 438 82.2
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.6e-215 752.7 437 81.7
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.3e-214 748.8 438 80.6
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 6.8e-214 747.3 438 81.7
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.0e-213 745.7 438 79.5
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 4.9e-212 741.1 438 79.7
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 8.3e-212 740.3 438 78.8
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 8.3e-212 740.3 438 78.8
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 5.4e-211 737.6 438 79.5
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 7.1e-211 737.3 438 79.2
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 1.3e-209 733.0 438 78.1
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.7e-209 732.6 441 78.7
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 2.3e-209 732.3 439 79.7
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 2.3e-209 732.3 438 79.5
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 6.6e-209 730.7 436 79.4
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 5.6e-208 727.6 437 79.6
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.1e-207 725.7 438 78.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 2.8e-207 725.3 438 78.5
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.4e-206 723.0 438 77.6
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.4e-206 722.2 438 77.9
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 5.2e-206 721.1 439 78.6
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.2e-205 719.9 439 77.7
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.2e-205 719.9 440 78.6
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.8e-205 717.6 438 77.4
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 7.6e-205 717.2 438 75.6
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.9e-204 715.3 438 77.2
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.9e-204 715.3 438 77.9
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 3.8e-204 714.9 440 77.0
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 3.8e-204 714.9 437 76.7
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 8.4e-204 713.8 436 77.8
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 2.4e-203 712.2 438 77.6
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 1.2e-202 709.9 437 76.9
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 2.1e-202 709.1 436 76.4
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 2.7e-202 708.8 429 77.2
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 6.0e-202 707.6 437 76.0
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 7.8e-202 707.2 429 77.4
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.8e-202 707.2 438 76.7
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.7e-201 706.1 438 74.7
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 2.3e-201 705.7 438 76.5
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 2.3e-201 705.7 455 73.4
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 3.0e-201 705.3 429 77.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.9e-200 702.6 438 76.7
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 2.5e-200 702.2 439 75.9
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 5.6e-200 701.0 433 76.0
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 7.3e-200 700.7 439 75.4
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 7.3e-200 700.7 429 75.8
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-199 699.5 447 74.9
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 3.6e-199 698.4 428 77.3
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 8.1e-199 697.2 439 74.9
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 1.1e-198 696.8 421 79.1
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 2.0e-197 692.6 394 81.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.6e-197 692.2 437 73.9
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 2.6e-197 692.2 438 74.2
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.3e-196 689.9 438 75.3
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.3e-196 689.9 424 76.4
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 2.9e-196 688.7 419 78.3
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 3.8e-196 688.3 438 72.1
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 8.4e-196 687.2 441 75.1
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.9e-195 686.0 438 74.0
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.2e-195 685.3 437 75.3
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 3.2e-195 685.3 427 76.1
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 5.4e-195 684.5 443 73.6
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.0e-193 680.2 421 76.7
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.3e-193 679.9 427 73.8
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 6.6e-193 677.6 438 74.4
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.5e-192 676.4 416 76.4
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-190 670.2 463 71.1
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.4e-190 669.1 410 76.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.9e-190 667.5 447 72.7
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.8e-188 661.8 429 71.8
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.7e-186 655.6 420 75.0
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.8e-185 652.9 429 70.6
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 3.0e-185 652.1 418 73.0
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.9e-185 651.7 452 70.6
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.2e-181 640.2 429 69.9
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.4e-179 633.3 473 66.4
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.9e-177 625.2 397 73.8
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 7.6e-173 610.9 438 65.1
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.0e-172 610.5 493 63.1
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.9e-171 606.3 436 64.9
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.1e-168 597.0 420 70.5
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 2.5e-168 595.9 447 65.1
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 5.0e-164 581.6 481 58.8
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 8.5e-164 580.9 354 79.1
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 2.1e-162 576.2 438 64.8
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 6.1e-162 574.7 540 56.3
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 1.1e-160 570.5 392 70.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.3e-159 567.0 364 74.2
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 4.8e-159 565.1 430 66.0
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 5.5e-155 551.6 374 69.3
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 8.8e-153 544.3 438 61.9
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 3.3e-152 542.3 428 60.5
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 3.8e-148 528.9 431 58.9
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 6.5e-148 528.1 463 55.9
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.3e-145 519.6 421 61.8
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.1e-144 517.3 435 56.6
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 5.7e-144 515.0 465 57.0
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.3e-143 513.8 270 91.1
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.8e-135 485.3 430 54.2
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 1.6e-130 470.3 437 53.1
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 8.0e-122 441.4 412 52.9
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.3e-111 407.5 245 75.1
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 8.3e-103 378.3 244 75.4
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 9.2e-102 374.8 389 46.5
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 3.7e-95 352.8 278 62.9
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 6.4e-95 352.1 208 76.9
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.4e-94 350.9 449 41.2
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.9e-94 350.5 195 82.1
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 7.1e-94 348.6 243 72.8
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.1e-89 334.7 503 37.0
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 4.9e-63 246.1 162 72.2
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 8.4e-63 245.4 215 60.9
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 3.9e-60 236.5 255 52.2
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 9.3e-54 215.3 141 74.5
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.9e-52 209.9 169 56.8
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 7.4e-51 205.7 152 67.1
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 7.7e-48 195.7 187 57.2
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 2.2e-47 194.1 184 54.3
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.1e-46 191.8 420 31.2
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 3.6e-45 186.8 113 74.3
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 3.6e-45 186.8 93 84.9
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 5.7e-43 179.5 145 64.1
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 1.0e-39 168.7 125 68.8
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 9.4e-38 162.2 132 57.6
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 2.7e-37 160.6 96 78.1
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 3.0e-36 157.1 86 82.6
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 5.7e-35 152.9 130 63.1
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 1.1e-30 138.7 173 46.8
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 4.2e-30 136.7 126 58.7
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.9e-22 111.3 67 83.6
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 9.4e-22 109.0 66 78.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.0e-21 105.9 96 51.0
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.2e-19 102.1 67 77.6
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.5e-19 101.7 65 80.0
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 9.4e-14 82.4 82 54.9
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 9.4e-14 82.4 55 70.9
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 9.4e-14 82.4 55 70.9
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 2.1e-13 81.3 53 71.7
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 8.8e-12 75.9 190 32.6
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.8e-11 72.4 40 82.5
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.7e-10 71.6 51 70.6
A08p00430 Brassica napus HOM05D004472 ORTHO05D033033 2.7e-08 64.3 64 54.7
C06p10840 Brassica napus HOM05D004472 ORTHO05D033033 2.7e-08 64.3 64 54.7
BolC1t01386H Brassica oleracea HOM05D004472 ORTHO05D041278 1.9e-06 58.2 79 48.1
BolC1t01387H Brassica oleracea HOM05D004472 ORTHO05D033033 2.5e-06 57.8 36 77.8
A08p00440 Brassica napus HOM05D004472 ORTHO05D041278 7.3e-06 56.2 79 46.8


User provided reference genes

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