Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.7e-127 459.5 270 100.0
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.6e-101 373.2 272 80.1
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.7e-93 345.5 270 74.1
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.7e-80 302.8 286 69.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-76 290.4 273 67.0
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.5e-75 287.0 279 67.4
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 5.0e-74 282.0 276 66.3
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-73 280.4 278 66.5
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 5.5e-73 278.5 278 66.5
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 1.6e-72 276.9 291 65.3
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 8.2e-69 264.6 275 66.9
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 1.8e-68 263.5 275 66.5
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 4.5e-67 258.8 273 64.5
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 4.5e-67 258.8 273 64.5
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 4.5e-67 258.8 273 64.5
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 3.8e-66 255.8 275 63.3
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 5.0e-66 255.4 277 62.8
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 2.0e-62 243.4 230 67.8
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-60 237.3 274 60.6
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 3.1e-60 236.1 277 59.2
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.5e-57 227.3 222 67.1
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.8e-55 220.3 277 63.2
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 7.0e-44 181.8 285 47.4
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 9.8e-38 161.4 323 40.9
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.7e-37 159.5 312 40.4
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 7.8e-35 151.8 262 49.2
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.5e-27 126.3 273 38.5
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.7e-26 124.0 275 39.3
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.0e-26 122.5 275 38.9
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.6e-24 116.3 348 32.2
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 6.2e-24 115.5 354 33.1
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 6.2e-24 115.5 132 55.3
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.2e-24 115.5 344 31.1
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.3e-23 113.6 329 33.1
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 3.1e-23 113.2 127 54.3
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 6.8e-23 112.1 134 51.5
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 6.8e-23 112.1 137 48.9
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 6.8e-23 112.1 87 65.5
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 8.9e-23 111.7 319 35.4
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 8.9e-23 111.7 121 54.5
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.9e-23 111.7 329 33.4
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.2e-22 111.3 136 52.2
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.5e-22 110.9 332 33.1
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.0e-22 110.5 125 52.8
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.0e-22 110.5 257 35.4
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 2.6e-22 110.2 335 31.6
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.4e-22 109.8 116 56.9
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 3.4e-22 109.8 339 33.0
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 4.4e-22 109.4 269 36.1
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 5.8e-22 109.0 143 51.0
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 5.8e-22 109.0 85 68.2
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.8e-22 109.0 352 33.0
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 9.8e-22 108.2 271 35.1
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.3e-21 107.8 124 51.6
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.7e-21 107.5 366 32.0
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.7e-21 107.5 340 32.6
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.7e-21 107.5 371 33.7
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-21 107.5 361 31.3
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.9e-21 106.7 120 55.0
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 2.9e-21 106.7 366 33.3
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.7e-21 106.3 274 37.6
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 3.7e-21 106.3 115 56.5
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 4.9e-21 105.9 304 36.8
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.1e-20 104.8 130 50.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.4e-20 104.4 138 51.4
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.4e-20 104.4 135 48.1
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 1.4e-20 104.4 141 49.6
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.4e-20 104.4 139 49.6
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.9e-20 104.0 303 36.0
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 1.9e-20 104.0 328 31.7
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.9e-20 104.0 145 49.7
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 2.4e-20 103.6 136 49.3
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 2.4e-20 103.6 138 47.8
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 4.1e-20 102.8 353 32.6
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.4e-20 102.4 172 44.8
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 5.4e-20 102.4 157 46.5
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.1e-20 102.1 357 30.5
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 9.2e-20 101.7 111 54.1
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 9.2e-20 101.7 127 50.4
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 9.2e-20 101.7 163 41.1
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 9.2e-20 101.7 344 29.4
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.2e-19 101.3 134 50.0
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.2e-19 101.3 134 47.0
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.2e-19 101.3 134 47.8
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 1.6e-19 100.9 394 27.7
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.1e-19 100.5 134 50.0
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.1e-19 100.5 125 50.4
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 2.1e-19 100.5 133 46.6
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 4.6e-19 99.4 127 49.6
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.6e-19 99.4 124 52.4
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 4.6e-19 99.4 138 45.7
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 6.0e-19 99.0 130 48.5
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 7.8e-19 98.6 361 29.6
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.0e-18 98.2 128 47.7
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.0e-18 98.2 133 48.1
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.0e-18 98.2 141 46.1
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.0e-18 98.2 121 52.1
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 1.3e-18 97.8 142 47.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.3e-18 97.8 361 30.2
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-18 97.8 109 52.3
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.3e-18 97.8 111 52.3
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-18 97.8 326 33.1
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.3e-18 97.8 195 37.4
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-18 97.8 357 30.8
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.3e-18 97.8 97 55.7
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.3e-18 97.8 97 55.7
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.7e-18 97.4 146 44.5
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-18 97.4 359 31.8
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 2.3e-18 97.1 110 51.8
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.3e-18 97.1 195 39.0
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.3e-18 97.1 361 30.2
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.3e-18 97.1 384 28.6
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 3.0e-18 96.7 127 48.8
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.0e-18 96.7 357 30.0
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 3.0e-18 96.7 367 28.3
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 3.9e-18 96.3 365 30.1
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.1e-18 95.9 106 54.7
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.1e-18 95.9 134 46.3
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 6.6e-18 95.5 118 50.8
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 8.6e-18 95.1 137 46.0
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.9e-17 94.0 108 51.9
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.5e-17 93.6 125 47.2
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.5e-17 93.6 118 50.8
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.3e-17 93.2 129 46.5
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 4.3e-17 92.8 138 44.9
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 4.3e-17 92.8 58 74.1
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 5.6e-17 92.4 166 39.2
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 5.6e-17 92.4 50 82.0
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.2e-16 91.3 124 47.6
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 1.2e-16 91.3 135 44.4
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.2e-16 91.3 136 45.6
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.6e-16 90.9 302 32.8
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.1e-16 90.5 157 41.4
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 2.1e-16 90.5 160 41.2
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.8e-16 90.1 126 46.0
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.6e-16 89.7 58 67.2
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 4.7e-16 89.4 157 41.4
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 6.2e-16 89.0 107 47.7
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.2e-16 89.0 163 38.7
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 8.1e-16 88.6 133 42.1
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 8.1e-16 88.6 61 70.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-15 87.8 63 73.0
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.8e-15 87.4 120 49.2
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 1.8e-15 87.4 131 43.5
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.3e-15 87.0 42 88.1
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.8e-15 85.5 50 82.0
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 6.8e-15 85.5 45 84.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 6.8e-15 85.5 39 92.3
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.2e-14 84.7 100 57.0
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.0e-14 84.0 110 47.3
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.0e-14 84.0 60 70.0
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.8e-14 82.4 108 50.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.8e-14 82.4 53 69.8
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.7e-13 80.9 58 63.8
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.4e-13 79.0 40 85.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.9e-12 77.4 91 47.3
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 5.4e-12 75.9 271 32.1
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-11 74.7 60 56.7
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.6e-11 74.3 91 45.1
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.7e-11 73.6 55 58.2
BcaB01g03437 Brassica carinata HOM05D003648 ORTHO05D004267 3.0e-10 70.1 61 73.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.9e-10 69.7 57 59.6
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 8.6e-10 68.6 83 45.8
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.5e-09 67.8 47 61.7
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 3.1e-07 60.1 107 38.3
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 5.2e-07 59.3 51 52.9
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 5.2e-07 59.3 126 32.5
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 6.8e-07 58.9 55 52.7
Gohir.A01G190633 Gossypium hirsutum HOM05D014635 ORTHO05D014310 9.9e-06 55.1 85 41.2


User provided reference genes

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