Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 2.6e-144 515.4 267 100.0
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 2.1e-133 479.2 267 92.9
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 1.2e-128 463.4 267 87.6
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 1.6e-120 436.4 267 86.1
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 3.5e-120 435.3 268 86.2
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 2.9e-114 415.6 267 82.8
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 2.9e-114 415.6 267 82.8
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 2.9e-114 415.6 267 82.8
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 2.5e-110 402.5 269 80.7
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 3.3e-110 402.1 269 80.7
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 9.5e-110 400.6 262 80.5
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.8e-92 343.2 201 88.1
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 1.1e-84 317.4 275 65.1
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 2.6e-75 286.2 280 59.3
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 4.4e-75 285.4 267 58.1
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 1.7e-74 283.5 267 58.1
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 2.2e-74 283.1 267 57.7
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 1.1e-73 280.8 271 57.2
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 3.2e-73 279.3 276 55.8
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 3.2e-73 279.3 272 57.7
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 9.3e-73 277.7 200 68.5
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 1.7e-71 273.5 267 57.3
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 3.9e-71 272.3 265 55.8
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 3.9e-71 272.3 263 55.5
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 3.9e-71 272.3 221 61.1
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 1.1e-70 270.8 205 65.9
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 1.9e-70 270.0 201 67.7
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 2.5e-70 269.6 274 54.7
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 7.3e-70 268.1 273 55.3
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 2.1e-69 266.5 273 55.7
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 3.6e-69 265.8 205 62.9
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 3.6e-69 265.8 280 55.7
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 6.2e-69 265.0 212 60.4
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 1.1e-68 264.2 202 63.9
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 1.4e-68 263.8 266 57.1
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 1.4e-68 263.8 198 65.7
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 1.4e-68 263.8 217 59.9
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 2.4e-68 263.1 262 57.3
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 3.1e-68 262.7 269 55.4
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 3.1e-68 262.7 267 55.8
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 3.1e-68 262.7 275 54.5
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 5.3e-68 261.9 225 58.7
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 6.9e-68 261.5 276 52.9
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 6.9e-68 261.5 272 55.5
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 9.0e-68 261.2 271 54.6
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 9.0e-68 261.2 210 61.9
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 1.5e-67 260.4 213 61.0
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 1.5e-67 260.4 235 57.9
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 3.4e-67 259.2 280 52.1
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 5.8e-67 258.5 219 58.4
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 5.8e-67 258.5 267 53.9
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 3.8e-66 255.8 247 55.1
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 3.8e-66 255.8 197 62.9
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 3.8e-66 255.8 197 62.9
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 3.8e-66 255.8 267 52.1
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 8.4e-66 254.6 213 59.6
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.4e-65 253.8 198 62.6
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 3.2e-65 252.7 222 57.2
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 4.2e-65 252.3 198 62.1
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 4.2e-65 252.3 270 50.7
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 9.3e-65 251.1 185 67.0
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 1.2e-64 250.8 212 59.0
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 2.7e-64 249.6 268 53.4
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 2.7e-64 249.6 269 53.2
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 3.5e-64 249.2 264 54.2
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 7.9e-64 248.1 267 54.3
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 1.0e-63 247.7 223 57.0
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 1.8e-63 246.9 201 63.7
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 3.9e-63 245.7 201 63.2
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 3.9e-63 245.7 243 53.9
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 5.1e-63 245.4 270 50.7
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 1.1e-62 244.2 245 54.7
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 1.9e-62 243.4 245 54.3
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 5.6e-62 241.9 201 62.7
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 7.4e-62 241.5 203 59.1
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 7.4e-62 241.5 236 53.8
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.6e-61 240.4 200 60.5
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 2.8e-61 239.6 203 57.1
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 1.4e-60 237.3 282 51.1
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.8e-60 236.9 200 59.0
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 1.8e-60 236.9 203 60.1
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 2.4e-60 236.5 214 55.1
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 6.9e-60 235.0 264 49.2
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 3.4e-59 232.6 203 59.1
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 7.6e-59 231.5 203 57.6
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 3.8e-58 229.2 238 52.5
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 4.2e-57 225.7 222 53.2
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 3.9e-55 219.2 204 52.9
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 3.3e-54 216.1 247 49.8
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 1.3e-53 214.2 195 55.4
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 2.1e-53 213.4 195 57.9
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 2.8e-53 213.0 221 51.6
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 1.8e-52 210.3 226 51.3
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 5.9e-51 205.3 266 47.0
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 2.2e-50 203.4 260 45.4
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 2.9e-50 203.0 269 44.2
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 3.8e-50 202.6 265 46.8
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 2.2e-45 186.8 211 55.5
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 4.8e-45 185.7 205 53.2
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 5.3e-44 182.2 149 62.4
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 3.4e-43 179.5 195 55.9
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 7.7e-43 178.3 243 42.8
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 5.0e-42 175.6 257 40.1
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 6.5e-42 175.3 158 55.7
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 2.5e-33 146.7 231 40.7
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 3.7e-29 132.9 206 42.2
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 4.8e-29 132.5 186 39.2
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.1e-25 121.3 68 89.7
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 5.7e-22 109.0 71 80.3
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 1.7e-21 107.5 71 78.9
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 1.6e-19 100.9 77 62.3
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 1.6e-19 100.9 211 29.9
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 1.5e-17 94.4 144 36.1
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 1.6e-16 90.9 187 31.0
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 6.8e-15 85.5 123 38.2
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 4.1e-12 76.3 65 55.4


User provided reference genes

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