Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.9e-106 389.0 275 100.0
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.2e-86 323.9 281 87.9
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 3.2e-76 289.3 285 84.9
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.4e-62 242.7 289 76.8
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 6.0e-59 231.9 285 74.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.7e-58 230.3 285 73.7
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.7e-58 230.3 283 64.0
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.6e-58 228.4 285 66.3
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.6e-58 228.4 285 66.3
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 8.1e-56 221.5 283 73.1
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.3e-50 203.4 284 73.9
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.5e-41 173.3 307 64.2
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 4.8e-40 169.1 301 63.8
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.3e-39 165.6 307 63.5
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.2e-38 164.5 307 63.8
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.6e-38 163.3 298 62.4
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 5.0e-37 159.1 301 61.8
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 8.4e-37 158.3 308 61.7
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.5e-36 156.8 308 61.4
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.5e-36 156.8 308 61.4
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.5e-36 156.8 308 61.4
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 4.2e-36 156.0 314 60.5
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.0e-34 151.4 306 59.8
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 7.4e-33 145.2 309 60.2
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.8e-32 142.5 314 60.2
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.2e-28 129.8 286 57.7
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 7.2e-28 128.6 287 60.3
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 2.1e-27 127.1 263 49.0
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.6e-27 125.9 273 58.6
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 4.6e-27 125.9 274 57.7
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.4e-26 124.4 279 58.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.1e-26 122.5 271 59.4
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.1e-26 122.5 273 58.2
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 5.1e-26 122.5 273 58.2
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 6.7e-26 122.1 268 56.3
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.8e-26 121.7 268 59.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.1e-25 121.3 279 44.1
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.1e-25 121.3 292 58.2
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.5e-25 120.9 271 57.9
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.5e-25 120.9 279 59.5
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.0e-25 120.6 288 54.9
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.5e-25 120.2 287 59.2
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 4.3e-25 119.4 274 59.1
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.7e-24 117.5 215 64.2
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.7e-24 117.5 258 57.4
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.2e-24 117.1 273 58.6
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.8e-24 115.9 281 56.2
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 4.8e-24 115.9 274 52.6
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 4.8e-24 115.9 292 55.5
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.8e-24 115.9 274 56.2
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 6.3e-24 115.5 284 58.5
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 6.3e-24 115.5 256 57.0
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 8.2e-24 115.2 274 57.7
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 8.2e-24 115.2 288 52.1
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 8.2e-24 115.2 278 60.8
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.1e-23 114.8 291 52.2
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.1e-23 114.8 277 56.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.4e-23 114.4 260 58.1
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.4e-23 113.6 278 56.1
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.1e-23 113.2 278 55.8
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 4.1e-23 112.8 278 56.1
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 4.1e-23 112.8 262 58.4
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.1e-23 112.8 278 56.1
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 5.3e-23 112.5 283 56.2
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 6.9e-23 112.1 285 56.1
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 6.9e-23 112.1 276 56.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 6.9e-23 112.1 196 45.9
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 9.1e-23 111.7 184 45.1
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.2e-22 111.3 282 56.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.2e-22 111.3 291 56.4
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.5e-22 110.9 267 57.7
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 2.0e-22 110.5 269 54.3
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.6e-22 110.2 265 57.7
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.6e-22 110.2 269 56.5
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 4.5e-22 109.4 276 56.9
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.5e-22 109.4 265 60.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.5e-22 109.4 272 55.9
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 5.9e-22 109.0 292 56.5
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 5.9e-22 109.0 282 54.6
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 7.7e-22 108.6 270 55.9
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 7.7e-22 108.6 273 59.7
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.3e-21 107.8 264 58.7
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.2e-21 107.1 281 52.3
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 3.8e-21 106.3 290 52.8
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.8e-21 106.3 290 52.8
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.0e-21 105.9 281 52.0
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.0e-21 105.9 292 51.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.0e-21 105.9 192 42.7
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 6.5e-21 105.5 301 50.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 6.5e-21 105.5 296 53.4
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 6.5e-21 105.5 270 56.3
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 8.5e-21 105.1 217 64.1
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.1e-20 104.8 214 66.4
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.1e-20 104.8 263 57.8
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.1e-20 104.8 281 52.0
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.1e-20 104.8 186 43.5
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.5e-20 103.6 277 54.9
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.5e-20 103.6 254 57.5
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 3.2e-20 103.2 189 43.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 3.2e-20 103.2 280 53.9
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 4.2e-20 102.8 293 53.2
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 4.2e-20 102.8 261 58.6
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 5.5e-20 102.4 209 48.8
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.4e-20 101.7 301 51.5
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 9.4e-20 101.7 262 58.0
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.2e-19 101.3 262 57.3
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.6e-19 100.9 294 52.4
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.1e-19 100.5 313 48.9
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 3.6e-19 99.8 281 51.2
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 4.7e-19 99.4 272 52.9
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 4.7e-19 99.4 271 56.1
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.7e-19 99.4 277 43.0
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 4.7e-19 99.4 294 53.4
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.7e-19 99.4 261 54.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 6.1e-19 99.0 261 56.3
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.1e-19 99.0 174 44.8
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 7.9e-19 98.6 290 50.3
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.0e-18 98.2 175 44.6
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.0e-18 98.2 198 40.4
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.3e-18 97.1 274 55.1
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 2.3e-18 97.1 199 37.7
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 3.0e-18 96.7 197 40.1
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 6.7e-18 95.5 295 53.9
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.5e-17 94.4 170 40.6
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.0e-17 94.0 270 57.0
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 2.0e-17 94.0 271 43.5
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.6e-17 93.6 306 49.7
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 3.3e-17 93.2 188 41.5
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 4.4e-17 92.8 132 47.7
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.4e-17 92.8 275 51.6
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.7e-16 89.7 268 50.7
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 3.7e-16 89.7 211 37.0
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 4.8e-16 89.4 258 51.2
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 8.2e-16 88.6 269 53.5
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.8e-15 87.4 249 56.2
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.4e-15 87.0 290 51.4
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 4.1e-15 86.3 283 53.7
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 7.0e-15 85.5 188 39.4
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 7.0e-15 85.5 128 46.9
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 9.1e-15 85.1 129 43.4
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 9.1e-15 85.1 167 38.9
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.0e-14 84.0 276 43.1
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.6e-14 83.6 230 37.0
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 4.5e-14 82.8 182 40.7
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.9e-13 80.1 133 45.9
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.8e-13 79.7 162 72.8
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 8.5e-13 78.6 255 54.9
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 9.4e-12 75.1 262 54.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 2.1e-11 73.9 274 49.6
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.7e-11 72.8 173 34.1
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 4.7e-11 72.8 274 51.5
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.1e-11 72.4 277 52.0
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 8.0e-11 72.0 272 47.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 4.0e-10 69.7 190 64.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 5.2e-10 69.3 228 40.4
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 1.5e-09 67.8 266 35.7
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.5e-09 67.8 241 53.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.8e-07 60.8 283 47.7
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 4.1e-07 59.7 35 80.0
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 7.0e-07 58.9 162 31.5
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 2.0e-06 57.4 145 37.9


User provided reference genes

Program Settings