Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 2.8e-123 445.3 221 100.0
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 3.4e-97 358.6 207 85.5
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 7.1e-95 350.9 208 84.1
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 8.5e-80 300.8 206 71.8
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 2.5e-79 299.3 206 73.3
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 9.4e-79 297.4 207 73.4
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 3.6e-78 295.4 199 74.9
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 6.7e-77 291.2 206 70.4
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 1.4e-74 283.5 205 68.3
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 1.8e-74 283.1 205 67.8
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 3.8e-72 275.4 205 67.3
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 3.8e-72 275.4 205 67.3
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 8.5e-72 274.2 205 66.8
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 5.2e-61 238.4 205 60.5
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 2.5e-55 219.5 205 51.2
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 1.2e-54 217.2 204 52.9
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 1.6e-54 216.9 205 51.2
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 2.7e-54 216.1 202 54.0
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 1.0e-53 214.2 195 55.4
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 2.3e-53 213.0 204 53.4
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 2.3e-53 213.0 204 51.0
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 8.8e-53 211.1 195 54.9
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 2.0e-52 209.9 200 54.5
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 7.5e-52 208.0 200 52.5
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 7.5e-52 208.0 202 55.0
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 1.7e-51 206.8 202 50.5
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 2.4e-50 203.0 202 53.0
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 3.1e-50 202.6 199 51.8
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 3.1e-50 202.6 200 50.5
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 5.4e-50 201.8 195 50.8
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 5.4e-50 201.8 199 52.3
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 7.0e-50 201.4 199 51.8
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 1.6e-49 200.3 200 52.0
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 1.6e-49 200.3 199 49.2
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 2.0e-49 199.9 192 51.6
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 2.7e-49 199.5 199 51.3
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 2.7e-49 199.5 199 51.3
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 2.7e-49 199.5 202 50.0
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 3.5e-49 199.1 199 51.3
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 7.7e-49 198.0 199 50.8
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 1.0e-48 197.6 191 53.4
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 1.3e-48 197.2 204 49.5
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 6.5e-48 194.9 202 47.5
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 1.5e-47 193.7 196 49.5
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 1.5e-47 193.7 209 48.3
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 3.2e-47 192.6 195 49.2
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 5.5e-47 191.8 204 47.5
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 7.2e-47 191.4 211 47.9
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 7.2e-47 191.4 210 50.0
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 7.2e-47 191.4 209 46.9
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 1.2e-46 190.7 202 49.5
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 1.2e-46 190.7 202 48.0
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 1.2e-46 190.7 204 47.5
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 2.7e-46 189.5 202 46.0
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 6.1e-46 188.3 204 46.6
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 6.1e-46 188.3 195 48.2
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 1.0e-45 187.6 196 50.0
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 1.0e-45 187.6 185 52.4
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 3.0e-45 186.0 202 45.5
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 5.2e-45 185.3 187 51.3
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 5.2e-45 185.3 206 49.5
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 1.2e-44 184.1 203 47.8
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 1.5e-44 183.7 202 46.5
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 1.5e-44 183.7 197 46.2
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 2.6e-44 183.0 184 50.0
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 4.4e-44 182.2 235 46.8
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 5.7e-44 181.8 202 47.0
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 7.5e-44 181.4 207 45.4
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 1.7e-43 180.3 214 46.7
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 1.7e-43 180.3 212 44.8
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 2.2e-43 179.9 184 49.5
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 1.1e-42 177.6 202 46.5
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 1.4e-42 177.2 180 50.0
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 1.8e-42 176.8 188 47.9
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 9.2e-42 174.5 206 46.6
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 4.5e-41 172.2 216 44.9
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 1.7e-40 170.2 162 53.1
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 2.3e-40 169.9 202 44.6
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 1.5e-39 167.2 206 44.2
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 4.3e-39 165.6 200 45.5
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 5.6e-39 165.2 192 46.4
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 1.6e-38 163.7 162 48.8
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 2.1e-38 163.3 215 42.3
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 6.1e-38 161.8 207 42.0
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 2.2e-35 153.3 145 55.9
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 2.2e-35 153.3 201 41.8
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 2.2e-35 153.3 204 42.6
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 3.3e-31 139.4 145 50.3
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 1.2e-30 137.5 186 40.9
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 3.6e-30 136.0 136 51.5
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 1.4e-29 134.0 133 52.6
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 3.2e-26 122.9 143 46.9
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 4.1e-26 122.5 102 61.8
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 4.1e-26 122.5 182 41.8
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 4.1e-26 122.5 193 36.8
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 1.2e-25 120.9 116 56.0
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 7.3e-23 111.7 108 49.1
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 7.3e-23 111.7 113 52.2
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 2.1e-22 110.2 132 44.7
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 4.7e-22 109.0 202 33.2
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 6.2e-22 108.6 191 34.0
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 4.0e-21 105.9 198 31.3
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 2.9e-19 99.8 132 42.4
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 1.6e-14 84.0 191 31.4
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 2.2e-11 73.6 135 34.8
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 2.2e-11 73.6 135 34.8
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 2.2e-11 73.6 135 34.8
AT1G80720 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 1.9e-10 70.5 193 28.0
Carub.0002s2683 Capsella rubella HOM05D001009 ORTHO05D000829 1.2e-09 67.8 192 28.1
Sp5g35030 Schrenkiella parvula HOM05D001009 ORTHO05D000829 3.5e-09 66.2 193 27.5
BcaC08g47550 Brassica carinata HOM05D001009 ORTHO05D000829 1.7e-08 63.9 193 26.9
A07p44970 Brassica napus HOM05D001009 ORTHO05D000829 1.7e-08 63.9 197 27.4
BolC6t40393H Brassica oleracea HOM05D001009 ORTHO05D000829 1.7e-08 63.9 193 26.9
Thhalv10019068m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 2.3e-08 63.5 193 25.9
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 3.0e-08 63.2 199 27.1
C06p53750 Brassica napus HOM05D001009 ORTHO05D000829 3.9e-08 62.8 193 26.9
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 5.1e-08 62.4 192 26.0
Thhalv10008623m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 1.1e-07 61.2 201 23.9
PSO675G0087 Papaver somniferum HOM05D001009 ORTHO05D000829 1.1e-07 61.2 197 25.9
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 1.9e-07 60.5 89 36.0
CDE06G2341 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 3.3e-07 59.7 155 27.7
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 4.3e-07 59.3 193 26.4
HPP92_007460 Vanilla planifolia HOM05D001009 ORTHO05D000829 4.3e-07 59.3 194 28.9
BraA07t32002Z Brassica rapa HOM05D001009 ORTHO05D000829 5.6e-07 58.9 193 26.4
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 5.6e-07 58.9 161 24.2
PSO017G3868 Papaver somniferum HOM05D001009 ORTHO05D000829 7.3e-07 58.5 193 26.4
AL1G28030 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 1.2e-06 57.8 200 22.5
Carub.0001s1567 Capsella rubella HOM05D001009 ORTHO05D000829 1.6e-06 57.4 201 24.4
PGR031G1509 Punica granatum HOM05D001009 ORTHO05D000829 1.6e-06 57.4 194 26.8
CARHR016390 Cardamine hirsuta HOM05D001009 ORTHO05D000829 2.1e-06 57.0 201 23.4
DCAR_025580 Daucus carota HOM05D001009 ORTHO05D000829 2.1e-06 57.0 187 23.5
Aqoxy1G00831 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 2.8e-06 56.6 192 27.1
Phvul.010G159900 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 3.6e-06 56.2 196 26.0
TPR.G27325 Trifolium pratense HOM05D001009 ORTHO05D000829 4.7e-06 55.8 189 24.9
Lj5A78T82 Lonicera japonica HOM05D001009 ORTHO05D000829 6.2e-06 55.5 209 23.4
Sopen03g035990 Solanum pennellii HOM05D001009 ORTHO05D000829 6.2e-06 55.5 188 24.5
AT1G15870 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 8.1e-06 55.1 196 23.5


User provided reference genes

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