Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41400 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 2.9e-79 298.5 151 100.0
AT2G41390 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 1.9e-62 242.7 152 84.9
AL4G39460 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 1.3e-58 229.9 149 83.2
A07p31290 Brassica napus HOM05D008071 ORTHO05D009954 2.8e-34 149.1 148 55.4
BraA07t30762Z Brassica rapa HOM05D008071 ORTHO05D009954 2.8e-34 149.1 148 55.4
BcaB03g15516 Brassica carinata HOM05D008071 ORTHO05D009954 2.8e-26 122.5 148 51.4
Thhalv10009029m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 2.0e-24 116.3 138 45.7
Carub.0001s2523 Capsella rubella HOM05D008071 ORTHO05D009954 1.7e-23 113.2 147 44.2
AL1G40040 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 1.4e-22 110.2 138 42.0
BcaC08g45854 Brassica carinata HOM05D008071 ORTHO05D009954 3.2e-22 109.0 148 47.3
CARHR136500 Cardamine hirsuta HOM05D008071 ORTHO05D009954 4.2e-22 108.6 149 41.6
CARHR026190 Cardamine hirsuta HOM05D008071 ORTHO05D009954 7.2e-22 107.8 140 42.1
CARHR026210 Cardamine hirsuta HOM05D008071 ORTHO05D009954 7.2e-22 107.8 123 46.3
Carub.0001s2525 Capsella rubella HOM05D008071 ORTHO05D009954 3.6e-21 105.5 139 47.5
Carub.0006s3123 Capsella rubella HOM05D008071 ORTHO05D009954 1.8e-20 103.2 151 43.0
Carub.0001s2524 Capsella rubella HOM05D008071 ORTHO05D009954 3.0e-20 102.4 147 41.5
BcaB03g12034 Brassica carinata HOM05D008071 ORTHO05D009954 1.1e-19 100.5 142 42.3
THA.LOC104827706 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 1.1e-19 100.5 123 40.7
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 2.6e-19 99.4 133 39.8
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 2.6e-19 99.4 133 39.8
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 2.6e-19 99.4 133 39.8
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 2.6e-19 99.4 133 39.8
Sp1g22940 Schrenkiella parvula HOM05D008071 ORTHO05D009954 2.6e-19 99.4 149 40.9
Sp5g23220 Schrenkiella parvula HOM05D008071 ORTHO05D009954 5.7e-19 98.2 117 43.6
AT5G05020 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 7.4e-19 97.8 127 42.5
BcaB05g24356 Brassica carinata HOM05D008071 ORTHO05D009954 9.7e-19 97.4 135 39.3
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 2.2e-18 96.3 133 39.1
A07p12520 Brassica napus HOM05D008071 ORTHO05D009954 2.2e-18 96.3 147 44.9
C03p73050 Brassica napus HOM05D008071 ORTHO05D009954 2.2e-18 96.3 141 39.0
BcaB03g14030 Brassica carinata HOM05D008071 ORTHO05D009954 3.7e-18 95.5 122 46.7
BcaB03g14033 Brassica carinata HOM05D008071 ORTHO05D009954 3.7e-18 95.5 122 46.7
Sp2g26770 Schrenkiella parvula HOM05D008071 ORTHO05D009954 3.7e-18 95.5 128 46.9
BcaC01g01683 Brassica carinata HOM05D008071 ORTHO05D009954 6.3e-18 94.7 141 38.3
BolC3t19602H Brassica oleracea HOM05D008071 ORTHO05D009954 6.3e-18 94.7 141 38.3
A04p31550 Brassica napus HOM05D008071 ORTHO05D009954 1.4e-17 93.6 139 38.8
BraA04t18611Z Brassica rapa HOM05D008071 ORTHO05D009954 1.4e-17 93.6 139 38.8
BcaC02g12899 Brassica carinata HOM05D008071 ORTHO05D009954 2.4e-17 92.8 150 37.3
BolC4t28398H Brassica oleracea HOM05D008071 ORTHO05D009954 2.4e-17 92.8 139 38.8
C04p68980 Brassica napus HOM05D008071 ORTHO05D009954 3.1e-17 92.4 122 41.0
BraA08t34634Z Brassica rapa HOM05D008071 ORTHO05D009954 3.1e-17 92.4 113 41.6
Aa31LG7G9180 Aethionema arabicum HOM05D008071 ORTHO05D009954 4.1e-17 92.0 136 40.4
BolC3t19605H Brassica oleracea HOM05D008071 ORTHO05D009954 1.7e-15 86.7 118 42.4
A09p39180 Brassica napus HOM05D008071 ORTHO05D009954 2.9e-15 85.9 134 39.6
BraA09t39418Z Brassica rapa HOM05D008071 ORTHO05D009954 3.8e-15 85.5 134 39.6
C05p25190 Brassica napus HOM05D008071 ORTHO05D009954 5.0e-15 85.1 134 38.8
C03p73100 Brassica napus HOM05D008071 ORTHO05D009954 6.5e-15 84.7 118 41.5
Thhalv10009039m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 6.5e-15 84.7 148 37.8
BraA07t29031Z Brassica rapa HOM05D008071 ORTHO05D009954 2.5e-14 82.8 134 42.5
A08p26850 Brassica napus HOM05D008071 ORTHO05D009954 4.2e-14 82.0 119 42.0
THA.LOC104827708 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 5.5e-14 81.6 125 39.2
BcaB03g12032 Brassica carinata HOM05D008071 ORTHO05D009954 3.6e-13 79.0 114 44.7
BcaC05g26476 Brassica carinata HOM05D008071 ORTHO05D009954 8.2e-10 67.8 86 45.3
Rhsim03G0040600 Rhododendron simsii HOM05D008071 ORTHO05D009954 8.2e-10 67.8 115 27.8
AL2G27010 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 1.1e-09 67.4 79 44.3
BcaC06g35221 Brassica carinata HOM05D008071 ORTHO05D009954 1.4e-09 67.0 86 43.0
C07p18520 Brassica napus HOM05D008071 ORTHO05D009954 1.4e-09 67.0 86 43.0
BolC7t42363H Brassica oleracea HOM05D008071 ORTHO05D009954 3.1e-09 65.9 86 41.9
Thhalv10009714m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 4.1e-09 65.5 77 50.6
ATR0006G003 Amborella trichopoda HOM05D008071 ORTHO05D009954 9.1e-09 64.3 118 33.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 9.1e-09 64.3 104 33.7
C06p36450 Brassica napus HOM05D008071 ORTHO05D009954 1.6e-08 63.5 45 64.4
BcaB03g14032 Brassica carinata HOM05D008071 ORTHO05D009954 2.7e-08 62.8 69 49.3
Solyc09g072770.1 Solanum lycopersicum HOM05D013183 ORTHO05D018130 2.7e-08 62.8 109 35.8
Sopen09g028540 Solanum pennellii HOM05D013183 ORTHO05D018130 3.5e-08 62.4 89 39.3
Dinv06965 Davidia involucrata HOM05D008071 ORTHO05D009954 5.9e-08 61.6 118 34.7
BolC5t31253H Brassica oleracea HOM05D008071 ORTHO05D009954 2.2e-07 59.7 92 39.1
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-07 59.7 76 40.8
CANSAT78G1840 Cannabis sativa HOM05D008071 ORTHO05D009954 2.5e-06 56.2 121 28.9
ATR0083G045 Amborella trichopoda HOM05D008071 ORTHO05D009954 7.2e-06 54.7 99 34.3


User provided reference genes

Program Settings