Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.5e-156 556.2 299 100.0
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.5e-153 545.0 300 98.3
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 5.0e-152 541.2 299 96.3
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 2.3e-149 532.3 299 94.6
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.6e-148 528.9 299 94.6
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 2.2e-147 525.8 299 94.3
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 1.1e-146 523.5 299 92.3
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 5.4e-146 521.2 299 92.3
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.6e-145 519.6 297 92.9
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.7e-145 518.8 299 92.0
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.7e-145 518.8 300 92.0
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 6.6e-144 514.2 300 91.7
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 2.5e-143 512.3 303 90.8
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 9.2e-138 493.8 297 88.6
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.5e-132 476.5 297 85.5
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 5.8e-124 448.0 298 79.9
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 6.4e-123 444.5 299 79.3
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.9e-122 443.0 293 80.2
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 2.4e-122 442.6 300 79.7
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.4e-122 441.4 286 80.4
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 7.1e-122 441.0 295 79.7
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.2e-121 440.3 294 78.2
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.1e-121 439.5 282 81.2
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.1e-121 439.5 282 81.2
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 6.0e-121 438.0 282 80.9
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 2.3e-120 436.0 293 79.2
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 3.9e-120 435.3 298 77.5
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 5.1e-120 434.9 298 77.5
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 6.6e-120 434.5 286 79.0
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 1.5e-119 433.3 279 82.1
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 3.3e-119 432.2 289 77.5
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 8.1e-118 427.6 298 76.5
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.1e-117 427.2 291 77.7
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 6.9e-117 424.5 288 76.7
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 9.0e-117 424.1 301 77.4
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 9.0e-117 424.1 298 74.8
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.2e-116 423.7 299 75.6
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 2.0e-116 422.9 285 76.8
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 2.0e-116 422.9 285 77.2
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.6e-116 422.5 300 74.7
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.6e-116 422.5 299 75.3
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 3.4e-116 422.2 291 77.3
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.4e-116 422.2 291 77.3
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 3.4e-116 422.2 286 76.9
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 5.8e-116 421.4 285 76.5
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.3e-115 420.2 300 74.3
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 2.9e-115 419.1 292 75.3
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 6.4e-115 417.9 300 74.0
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 1.9e-114 416.4 300 75.7
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 3.2e-114 415.6 297 74.4
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 5.4e-114 414.8 294 74.1
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.6e-113 413.3 299 74.2
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 2.1e-113 412.9 284 75.4
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 2.1e-113 412.9 296 73.6
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 3.5e-113 412.1 287 75.3
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 3.5e-113 412.1 285 76.1
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 4.6e-113 411.8 305 71.5
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 4.6e-113 411.8 305 71.5
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 7.9e-113 411.0 285 76.8
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 7.9e-113 411.0 296 75.7
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 1.0e-112 410.6 285 76.8
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.0e-112 410.6 305 71.1
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.3e-112 410.2 298 72.8
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.8e-112 409.8 264 81.1
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.3e-112 409.5 281 77.6
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.1e-112 408.3 265 80.4
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 6.7e-112 407.9 281 75.4
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.1e-111 407.1 296 75.0
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 1.5e-111 406.8 282 75.5
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 1.9e-111 406.4 294 72.8
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.9e-111 406.4 286 72.7
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.5e-111 406.0 264 80.3
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 3.3e-111 405.6 297 73.1
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 4.3e-111 405.2 298 71.5
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 9.6e-111 404.1 296 74.3
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 9.6e-111 404.1 296 74.7
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.6e-110 403.3 293 74.7
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 2.1e-110 402.9 287 74.2
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.1e-110 402.9 297 72.4
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 2.8e-110 402.5 280 76.1
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 4.8e-110 401.7 280 73.9
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 6.2e-110 401.4 281 75.8
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.1e-109 400.6 299 72.6
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 3.1e-109 399.1 284 72.5
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 6.9e-109 397.9 297 72.4
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 6.9e-109 397.9 284 72.5
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 1.2e-108 397.1 300 72.0
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 2.0e-108 396.4 281 74.0
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 2.6e-108 396.0 280 73.2
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 3.4e-108 395.6 283 72.8
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 3.4e-108 395.6 297 72.7
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 3.4e-108 395.6 321 68.5
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 3.4e-108 395.6 293 73.0
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 9.9e-108 394.0 280 72.9
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.2e-107 392.9 300 69.0
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 3.8e-107 392.1 334 64.4
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 4.9e-107 391.7 299 70.2
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 6.4e-107 391.3 324 67.0
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 8.4e-107 391.0 323 66.9
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 3.2e-106 389.0 300 72.0
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.5e-106 388.3 265 78.5
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.1e-106 387.9 300 68.7
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 1.6e-105 386.7 281 72.2
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.6e-105 386.7 269 74.3
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 2.7e-105 386.0 289 72.3
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.7e-105 386.0 289 72.3
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 4.6e-105 385.2 281 71.9
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.8e-104 383.3 283 74.6
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.3e-104 382.9 289 72.0
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 4.3e-103 378.6 284 69.0
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-100 370.2 264 76.5
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.9e-99 365.2 277 69.0
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.9e-98 363.2 285 66.7
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.2e-98 362.5 279 67.0
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.3e-98 360.9 233 80.3
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.7e-97 359.4 247 75.7
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 7.9e-97 357.8 349 59.6
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 9.7e-95 350.9 298 65.8
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 9.7e-95 350.9 310 62.3
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 2.8e-94 349.4 282 65.6
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 3.7e-94 349.0 298 64.1
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.3e-94 348.2 301 64.8
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.4e-93 347.1 300 65.0
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 5.3e-93 345.1 301 64.1
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.5e-92 343.6 283 65.0
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.4e-90 337.0 274 62.8
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 3.6e-89 332.4 295 59.3
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 7.9e-89 331.3 212 81.6
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 2.3e-88 329.7 301 59.5
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 3.4e-84 315.8 292 61.3
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.3e-79 299.3 211 75.8
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 4.4e-79 298.9 288 53.8
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 1.3e-75 287.3 266 61.3
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.1e-74 284.3 290 55.9
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 8.0e-73 278.1 287 51.2
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.5e-71 273.9 205 67.3
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 9.4e-66 254.6 203 65.0
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 2.7e-65 253.1 198 71.7
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 3.6e-65 252.7 165 77.6
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.4e-64 250.8 301 49.8
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.1e-61 241.1 252 55.6
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 2.8e-54 216.5 180 68.9
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 2.8e-54 216.5 180 68.9
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 2.7e-52 209.9 244 45.1
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 5.0e-51 205.7 163 67.5
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 4.2e-50 202.6 178 66.3
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 8.9e-48 194.9 109 90.8
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 8.9e-48 194.9 109 90.8
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 2.3e-40 170.2 99 88.9
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 5.6e-34 149.1 149 60.4
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 7.8e-28 128.6 94 70.2
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 5.1e-27 125.9 80 80.0
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 2.9e-22 110.2 85 64.7
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 6.0e-20 102.4 96 60.4
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.9e-18 97.4 63 77.8
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.6e-17 94.4 59 83.1
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 3.1e-16 90.1 69 69.6
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 1.2e-15 88.2 69 69.6
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 3.8e-14 83.2 77 59.7
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 4.9e-14 82.8 77 57.1
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.1e-13 81.6 94 51.1
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.1e-13 79.0 52 80.8
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 1.0e-11 75.1 77 57.1
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.7e-11 74.3 82 48.8
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 2.3e-11 73.9 82 50.0
BcaB01g01562 Brassica carinata HOM05D004217 ORTHO05D091974 1.5e-10 71.2 45 77.8
BcaB01g01563 Brassica carinata HOM05D004217 ORTHO05D094843 1.5e-10 71.2 45 77.8
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 2.5e-10 70.5 125 40.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 5.6e-10 69.3 39 84.6
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 5.6e-10 69.3 39 84.6
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.8e-09 66.2 62 59.7
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 6.9e-08 62.4 93 40.9


User provided reference genes

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