Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 9.7e-122 440.3 239 100.0
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 3.2e-101 372.1 241 88.4
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.2e-90 337.0 239 77.0
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 4.7e-84 315.1 248 73.8
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 5.0e-78 295.0 244 75.4
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.4e-72 276.2 248 65.3
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 9.2e-72 274.2 242 65.7
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 8.6e-70 267.7 243 64.6
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 8.6e-70 267.7 244 66.8
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.1e-69 267.3 243 64.6
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.1e-69 267.3 243 64.6
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.1e-53 214.2 256 59.4
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.1e-53 214.2 253 57.3
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 2.1e-52 209.9 244 53.7
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 2.1e-52 209.9 244 53.7
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 4.7e-52 208.8 249 57.4
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 2.0e-50 203.4 245 53.5
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 2.6e-50 203.0 245 53.1
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 2.6e-50 203.0 245 53.1
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.6e-50 203.0 255 54.5
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 5.8e-50 201.8 244 55.7
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 9.9e-50 201.1 244 53.7
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.9e-49 199.5 244 55.3
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.9e-48 196.8 261 51.3
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.2e-47 194.1 261 52.9
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 4.6e-47 192.2 247 54.3
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 4.6e-47 192.2 247 54.3
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 4.6e-47 192.2 247 54.3
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 7.8e-47 191.4 252 51.6
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.1e-43 181.0 255 51.0
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 3.1e-43 179.5 245 49.0
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 7.6e-42 174.9 259 52.1
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.7e-38 161.4 256 50.0
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.4e-32 142.1 248 41.5
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 8.7e-30 134.8 242 40.1
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 8.7e-30 134.8 253 37.9
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.9e-29 133.7 256 39.8
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 5.6e-29 132.1 246 39.4
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.3e-28 131.0 248 39.5
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 8.1e-28 128.3 246 39.8
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 3.4e-26 122.9 246 37.4
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.4e-26 122.9 175 48.0
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 4.5e-26 122.5 248 37.1
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.3e-25 120.9 245 35.9
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.2e-25 120.2 233 37.3
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.9e-25 119.8 244 38.1
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 3.8e-25 119.4 244 36.9
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 3.8e-25 119.4 262 34.7
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 4.9e-25 119.0 268 38.1
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 4.9e-25 119.0 261 37.5
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 6.4e-25 118.6 253 37.2
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 6.4e-25 118.6 259 37.8
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.1e-24 117.9 253 37.9
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.4e-24 117.5 248 36.7
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 3.2e-24 116.3 242 38.4
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 4.2e-24 115.9 271 36.5
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 7.1e-24 115.2 241 35.3
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 7.1e-24 115.2 248 36.7
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.2e-23 114.4 258 36.8
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.2e-23 114.4 242 36.4
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.1e-23 113.6 257 35.8
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 3.5e-23 112.8 174 42.5
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 4.6e-23 112.5 193 42.0
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 6.0e-23 112.1 232 36.2
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.0e-22 111.3 243 37.0
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.8e-22 110.5 258 35.7
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.8e-22 110.5 214 39.7
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.3e-22 110.2 258 36.8
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 5.1e-22 109.0 248 35.1
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 6.7e-22 108.6 264 37.9
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.1e-21 107.8 251 36.3
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.9e-21 107.1 249 37.8
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 2.5e-21 106.7 250 36.4
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 3.3e-21 106.3 242 38.8
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-20 104.4 239 33.5
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 2.8e-20 103.2 148 45.3
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.8e-20 103.2 249 38.2
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.8e-20 102.4 248 33.9
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 4.8e-20 102.4 249 35.7
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 6.2e-20 102.1 207 38.6
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 6.2e-20 102.1 160 43.8
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 6.2e-20 102.1 254 33.5
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.2e-20 101.7 249 38.2
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.8e-19 100.5 233 37.8
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.8e-19 100.5 241 33.6
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 4.0e-19 99.4 192 41.7
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.3e-19 99.0 138 46.4
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.3e-19 99.0 138 46.4
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 6.9e-19 98.6 188 39.9
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 9.0e-19 98.2 240 34.2
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.2e-18 97.8 190 38.9
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.5e-18 97.4 141 45.4
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.5e-18 97.4 212 37.7
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 2.0e-18 97.1 250 33.6
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.4e-18 96.3 138 45.7
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 4.5e-18 95.9 263 35.7
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 4.5e-18 95.9 253 32.8
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 4.5e-18 95.9 189 40.7
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 5.8e-18 95.5 269 33.5
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.3e-17 94.4 179 41.9
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.2e-17 93.6 251 35.1
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 2.2e-17 93.6 244 34.4
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 2.9e-17 93.2 138 42.0
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.9e-17 92.4 138 41.3
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 4.9e-17 92.4 237 34.2
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 4.9e-17 92.4 236 32.2
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 8.4e-17 91.7 252 34.1
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.9e-16 90.5 189 37.6
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 7.1e-16 88.6 209 34.9
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 7.1e-16 88.6 210 37.1
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 7.1e-16 88.6 239 31.0
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-15 87.8 138 42.0
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.6e-15 87.4 175 36.6
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-15 87.4 212 34.0
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 2.1e-15 87.0 238 34.9
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 2.7e-15 86.7 242 33.1
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.5e-15 86.3 138 41.3
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 7.9e-15 85.1 161 36.6
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 7.9e-15 85.1 235 31.5
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.3e-14 84.3 235 31.1
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.8e-14 84.0 238 31.9
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 3.0e-14 83.2 240 30.0
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 5.1e-14 82.4 217 36.9
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 8.7e-14 81.6 212 35.8
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-13 81.3 190 36.3
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.5e-13 80.9 245 33.5
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.5e-13 80.9 180 38.3
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.5e-13 80.9 235 29.8
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 7.4e-13 78.6 248 29.8
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.7e-12 76.3 152 38.2
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 3.7e-12 76.3 131 42.0
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 4.8e-12 75.9 157 36.9
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 8.2e-12 75.1 238 30.3
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.4e-11 74.3 182 34.1
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.4e-11 74.3 140 40.7
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.4e-11 74.3 245 29.8
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 1.8e-11 73.9 263 28.1
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 1.8e-11 73.9 195 32.8
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.4e-11 73.6 239 30.5
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 2.4e-11 73.6 185 36.8
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 2.4e-11 73.6 129 39.5
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 3.1e-11 73.2 188 35.1
BcaC02g12869 Brassica carinata HOM05D004369 ORTHO05D004907 1.5e-10 70.9 123 54.5
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 3.4e-10 69.7 188 36.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 5.9e-10 68.9 141 36.2
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 1.3e-09 67.8 146 37.7
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.8e-09 66.2 192 30.2
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 5.0e-09 65.9 181 32.0
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.9e-08 63.9 178 34.8
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 2.5e-08 63.5 178 37.1
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.2e-08 63.2 89 39.3
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 3.2e-08 63.2 162 30.9
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 5.5e-08 62.4 137 36.5
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 7.9e-07 58.5 119 35.3
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.0e-06 58.2 141 35.5
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.0e-06 58.2 164 32.9
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 1.8e-06 57.4 97 43.3
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 6.7e-06 55.5 73 46.6


User provided reference genes

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