Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.2e-198 696.4 378 100.0
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 4.8e-192 674.5 378 96.3
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.9e-182 641.0 380 93.7
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.3e-181 639.8 379 92.3
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 9.4e-180 633.6 353 92.1
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.0e-161 572.8 353 83.3
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 7.5e-161 570.9 379 82.3
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.7e-160 568.5 382 81.2
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-159 566.6 381 81.9
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.8e-159 566.2 390 77.4
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 7.0e-159 564.3 354 82.5
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 9.2e-159 563.9 380 85.3
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 9.2e-159 563.9 380 85.3
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.0e-158 562.8 391 77.0
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.5e-158 562.0 356 80.3
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.0e-157 558.9 392 76.5
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.3e-156 555.4 354 85.0
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.0e-149 531.6 356 78.1
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 4.4e-145 518.5 349 77.9
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 4.4e-145 518.5 349 77.9
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 6.8e-138 494.6 289 93.4
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.2e-126 457.2 349 70.2
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.5e-124 450.3 393 63.1
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 8.4e-120 434.5 384 66.1
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 9.3e-119 431.0 380 62.6
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 7.9e-118 427.9 378 69.3
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.0e-117 427.6 349 68.8
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.3e-117 427.2 352 64.8
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 3.3e-116 422.5 355 65.1
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.4e-114 417.2 388 61.3
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 4.0e-114 415.6 352 63.9
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 6.9e-114 414.8 408 56.1
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.2e-113 414.1 351 65.5
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.3e-112 410.6 377 61.3
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.3e-112 410.6 366 60.4
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 6.4e-112 408.3 364 66.5
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 4.2e-111 405.6 347 63.4
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 5.5e-111 405.2 374 59.9
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.6e-110 403.7 346 63.3
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 2.7e-110 402.9 374 59.9
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.0e-109 401.0 387 59.2
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 2.3e-109 399.8 346 63.3
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.3e-109 399.8 365 59.7
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 3.0e-109 399.4 345 62.6
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.0e-109 399.4 378 57.4
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 8.7e-109 397.9 369 59.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 1.1e-108 397.5 216 90.7
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.5e-108 397.1 355 60.6
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 2.5e-108 396.4 365 65.2
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 5.6e-108 395.2 375 59.2
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.6e-107 393.7 321 64.5
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.6e-107 393.7 321 64.5
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 2.1e-107 393.3 388 56.2
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.1e-106 391.0 375 60.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.1e-106 391.0 375 60.5
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.4e-106 390.6 370 60.0
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.8e-106 390.2 333 66.4
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 3.1e-106 389.4 314 66.6
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 5.3e-106 388.7 250 75.2
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 6.9e-106 388.3 260 74.2
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 9.0e-106 387.9 250 75.2
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 9.0e-106 387.9 297 68.4
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.2e-105 387.5 283 70.0
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.2e-105 387.5 349 64.5
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.6e-105 386.3 258 75.2
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 4.5e-105 385.6 317 66.9
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 1.3e-104 384.0 361 60.1
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.7e-104 383.6 243 77.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.9e-104 382.9 325 63.7
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 2.9e-104 382.9 298 66.8
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 4.9e-104 382.1 397 57.4
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 4.9e-104 382.1 249 75.9
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.9e-104 382.1 249 75.9
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 8.4e-104 381.3 415 53.3
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.1e-103 380.9 289 67.1
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.4e-103 380.6 331 62.8
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.4e-103 380.6 253 77.1
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.5e-103 379.8 284 68.3
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 3.2e-103 379.4 332 66.3
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 3.2e-103 379.4 253 73.9
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 7.1e-103 378.3 253 73.5
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 7.1e-103 378.3 327 63.6
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 9.3e-103 377.9 240 76.7
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.2e-102 377.5 336 62.5
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 2.1e-102 376.7 383 59.0
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.5e-102 375.9 252 73.8
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 4.6e-102 375.6 314 65.0
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.0e-101 374.4 343 58.6
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.3e-101 374.0 255 72.9
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.8e-101 373.6 315 62.9
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.0e-101 372.9 247 74.9
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.7e-101 371.7 301 68.1
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 6.7e-101 371.7 384 54.9
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 8.7e-101 371.3 325 61.2
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.6e-99 367.1 258 75.2
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.6e-99 367.1 309 63.8
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.8e-99 366.3 363 57.9
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 4.8e-99 365.5 309 62.1
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 4.8e-99 365.5 297 64.3
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 2.0e-97 360.1 338 58.6
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.6e-97 359.8 254 75.6
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 5.0e-96 355.5 240 70.4
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 8.5e-96 354.8 281 64.8
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.4e-95 354.0 256 66.8
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 5.5e-95 352.1 257 67.3
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.2e-94 350.9 233 72.5
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 6.1e-94 348.6 253 66.8
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 3.0e-93 346.3 246 73.6
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 3.1e-90 336.3 199 82.9
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.0e-88 331.3 244 66.0
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 7.9e-86 321.6 257 61.5
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 3.3e-84 316.2 286 57.0
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 7.4e-84 315.1 235 63.8
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.8e-83 313.2 295 56.6
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 3.1e-82 309.7 178 83.7
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 9.1e-82 308.1 181 84.5
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 6.5e-80 302.0 179 82.7
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 7.2e-79 298.5 241 65.1
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.1e-76 291.2 235 60.4
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.0e-76 290.4 234 60.3
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.5e-73 279.3 277 56.0
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.0e-72 278.1 286 55.9
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 2.9e-72 276.6 223 59.2
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 4.7e-70 269.2 196 75.0
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 3.8e-64 249.6 155 76.8
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.2e-63 246.5 162 79.6
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 8.8e-61 238.4 153 74.5
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 3.5e-57 226.5 395 39.5
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 7.2e-55 218.8 138 75.4
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 4.0e-53 213.0 134 82.1
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 6.8e-53 212.2 134 82.1
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 2.0e-52 210.7 134 91.0
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 5.7e-52 209.1 134 80.6
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 5.7e-52 209.1 134 80.6
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 9.8e-52 208.4 134 90.3
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.7e-51 207.6 134 79.9
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.7e-51 207.6 134 79.9
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-50 204.9 134 89.6
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 5.4e-50 202.6 377 43.0
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.0e-49 200.7 220 45.0
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.9e-49 199.1 220 44.5
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 4.0e-45 186.4 102 89.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 4.0e-45 186.4 102 89.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 4.1e-42 176.4 233 45.1
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 4.3e-39 166.4 279 35.8
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 4.7e-38 162.9 134 77.6
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 6.2e-38 162.5 265 35.1
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.4e-36 156.4 163 56.4
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 5.8e-36 156.0 106 77.4
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 5.8e-36 156.0 106 77.4
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 1.7e-35 154.5 106 76.4
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.0e-32 143.7 113 64.6
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 3.9e-32 143.3 91 74.7
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.4e-29 134.8 174 50.6
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.0e-29 133.3 125 59.2
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 5.8e-28 129.4 175 47.4
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.1e-26 122.5 209 40.7
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.1e-25 120.9 188 43.6
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 6.0e-25 119.4 87 89.7
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 3.9e-24 116.7 197 40.1
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 4.7e-22 109.8 82 62.2
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 6.8e-21 105.9 65 72.3
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 2.6e-20 104.0 82 64.6
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.7e-19 101.3 63 73.0
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 9.2e-18 95.5 193 31.1
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 7.3e-15 85.9 47 91.5
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 3.6e-14 83.6 44 93.2
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.2e-12 78.6 68 63.2


User provided reference genes

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