Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 3.2e-26 120.9 58 100.0
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 3.2e-26 120.9 58 100.0
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 9.5e-23 109.4 58 87.9
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 6.2e-22 106.7 58 87.9
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 7.0e-18 93.2 55 78.2
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 7.0e-18 93.2 55 78.2
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 7.0e-18 93.2 58 77.6
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 9.2e-18 92.8 55 80.0
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 9.2e-18 92.8 55 80.0
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.6e-17 92.0 56 76.8
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 1.6e-17 92.0 56 76.8
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.6e-17 92.0 56 76.8
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 1.0e-16 89.4 53 77.4
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 2.3e-16 88.2 53 75.5
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 1.6e-14 82.0 46 82.6
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 1.6e-14 82.0 46 82.6
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 2.1e-14 81.6 46 82.6
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 2.1e-14 81.6 46 82.6
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 2.8e-14 81.3 49 77.6
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 6.2e-14 80.1 46 78.3
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 2.0e-12 75.1 58 56.9
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 3.4e-12 74.3 47 78.7
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 4.4e-12 73.9 57 57.9
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.7e-11 72.0 60 55.0
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.2e-11 71.6 60 51.7
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 2.2e-11 71.6 60 55.0
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 3.7e-11 70.9 60 51.7
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 8.3e-11 69.7 58 55.2
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.9e-10 68.6 57 50.9
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.9e-10 68.6 57 50.9
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 3.2e-10 67.8 57 56.1
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 3.2e-10 67.8 58 55.2
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 3.2e-10 67.8 58 55.2
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 3.2e-10 67.8 58 55.2
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.1e-10 67.4 57 49.1
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 5.4e-10 67.0 59 57.6
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.4e-10 67.0 59 57.6
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 5.4e-10 67.0 60 51.7
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 9.2e-10 66.2 54 55.6
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.2e-10 66.2 59 57.6
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 9.2e-10 66.2 57 47.4
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.2e-09 65.9 60 53.3
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 60 51.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.6e-09 65.5 58 58.6
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.6e-09 65.5 58 58.6
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 2.1e-09 65.1 56 53.6
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.1e-09 65.1 56 50.0
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 2.7e-09 64.7 55 54.5
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 3.5e-09 64.3 43 65.1
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 3.5e-09 64.3 39 76.9
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 6.0e-09 63.5 49 55.1
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 7.8e-09 63.2 57 47.4
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 1.0e-08 62.8 37 78.4
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.0e-08 62.8 57 49.1
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.0e-08 62.8 45 55.6
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 1.3e-08 62.4 57 47.4
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.7e-08 62.0 48 54.2
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 1.7e-08 62.0 44 54.5
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 3.0e-08 61.2 54 51.9
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.0e-08 61.2 58 43.1
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 3.0e-08 61.2 47 55.3
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 3.0e-08 61.2 47 55.3
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 3.0e-08 61.2 50 54.0
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.9e-08 60.8 57 52.6
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 3.9e-08 60.8 47 53.2
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 5.1e-08 60.5 45 51.1
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 5.1e-08 60.5 52 50.0
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 5.1e-08 60.5 57 49.1
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.6e-08 60.1 55 47.3
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 6.6e-08 60.1 44 56.8
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 6.6e-08 60.1 57 50.9
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 8.6e-08 59.7 54 50.0
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 1.1e-07 59.3 45 51.1
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.5e-07 58.9 56 46.4
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.9e-07 58.5 54 44.4
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.9e-07 58.5 57 42.1
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 2.5e-07 58.2 37 64.9
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 2.5e-07 58.2 45 51.1
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.3e-07 57.8 56 46.4
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 3.3e-07 57.8 54 46.3
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 3.3e-07 57.8 56 50.0
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 4.3e-07 57.4 50 52.0
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.6e-07 57.0 55 43.6
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 7.3e-07 56.6 41 68.3
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 7.3e-07 56.6 47 48.9
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 9.5e-07 56.2 59 44.1
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.6e-06 55.5 55 45.5
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.1e-06 55.1 76 43.4
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 2.8e-06 54.7 57 43.9


User provided reference genes

Program Settings