Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 4.9e-125 451.1 215 100.0
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 1.0e-114 416.8 213 93.0
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 1.7e-109 399.4 213 87.8
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 1.9e-108 396.0 215 85.1
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 2.5e-105 385.6 213 84.5
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 3.1e-103 378.6 211 82.5
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 6.9e-103 377.5 205 83.9
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 9.0e-103 377.1 213 82.6
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 1.9e-100 369.4 210 81.9
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 1.9e-100 369.4 205 82.4
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 1.3e-96 356.7 212 78.8
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 2.1e-91 339.3 180 85.0
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 2.6e-89 332.4 210 71.0
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 9.7e-89 330.5 182 81.9
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 1.0e-74 283.9 215 59.5
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 1.2e-73 280.4 210 61.0
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 2.6e-73 279.3 210 61.4
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 3.4e-73 278.9 210 61.0
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 5.7e-73 278.1 207 61.4
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 3.7e-72 275.4 210 57.1
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 4.8e-72 275.0 215 59.5
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 6.3e-72 274.6 211 60.7
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 8.3e-72 274.2 203 63.5
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 8.3e-72 274.2 210 60.5
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 1.1e-71 273.9 210 58.6
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 3.1e-71 272.3 215 58.1
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 4.1e-71 271.9 207 59.4
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 9.1e-71 270.8 210 60.0
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 2.0e-70 269.6 210 59.0
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 2.0e-70 269.6 214 57.0
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 3.5e-70 268.9 215 59.5
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 5.9e-70 268.1 210 58.6
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 7.7e-70 267.7 210 57.6
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 7.7e-70 267.7 206 59.7
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 7.7e-70 267.7 205 59.0
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 1.7e-69 266.5 209 57.9
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 1.7e-69 266.5 209 57.9
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 3.8e-69 265.4 215 56.7
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 6.5e-69 264.6 207 57.5
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 6.5e-69 264.6 210 57.1
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 6.5e-69 264.6 214 56.5
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 1.1e-68 263.8 210 57.6
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 1.5e-68 263.5 208 57.2
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 1.5e-68 263.5 206 56.3
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 1.5e-68 263.5 223 56.1
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 1.5e-68 263.5 209 59.3
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 1.9e-68 263.1 207 59.4
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 3.2e-68 262.3 207 56.5
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 3.2e-68 262.3 210 57.1
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 3.2e-68 262.3 210 56.7
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 4.2e-68 261.9 210 58.1
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 5.5e-68 261.5 202 57.9
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 7.2e-68 261.2 210 54.8
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 1.6e-67 260.0 207 58.0
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 2.1e-67 259.6 214 56.5
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 2.7e-67 259.2 214 57.0
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 3.6e-67 258.8 208 58.2
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 6.1e-67 258.1 207 56.5
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 6.1e-67 258.1 210 55.2
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 1.0e-66 257.3 210 57.1
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 1.0e-66 257.3 209 56.5
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 1.0e-66 257.3 200 57.5
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 1.0e-66 257.3 200 57.5
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 3.0e-66 255.8 202 57.9
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 4.0e-66 255.4 207 56.5
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 4.0e-66 255.4 210 54.8
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 6.8e-66 254.6 210 54.3
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 1.5e-65 253.4 210 58.1
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 5.7e-65 251.5 210 54.8
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 9.8e-65 250.8 189 60.3
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 1.3e-64 250.4 214 54.7
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 1.7e-64 250.0 210 54.3
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 2.2e-64 249.6 207 56.5
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 2.2e-64 249.6 215 56.3
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 2.8e-64 249.2 193 57.0
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 8.3e-64 247.7 207 56.0
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 1.1e-63 247.3 208 56.7
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 1.8e-63 246.5 185 58.9
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 5.4e-63 245.0 246 48.0
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 7.0e-63 244.6 210 51.4
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 1.6e-62 243.4 234 51.7
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 6.6e-61 238.0 208 53.4
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 1.1e-60 237.3 207 53.1
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 2.1e-59 233.0 267 43.8
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 1.0e-58 230.7 207 48.8
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 2.6e-57 226.1 237 46.8
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 2.6e-57 226.1 206 53.4
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 2.6e-57 226.1 207 50.2
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 1.3e-56 223.8 207 52.7
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 8.3e-56 221.1 207 49.8
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 1.8e-55 219.9 202 54.5
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 1.8e-55 219.9 185 52.4
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 5.4e-55 218.4 172 55.8
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 1.5e-52 210.3 201 52.2
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 1.5e-52 210.3 180 52.8
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 1.4e-50 203.8 214 48.6
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 1.8e-50 203.4 164 58.5
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 1.5e-49 200.3 182 50.5
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 5.4e-47 191.8 208 47.1
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 1.3e-45 187.2 217 45.2
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 4.3e-44 182.2 212 45.3
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 1.4e-42 177.2 210 41.9
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 4.0e-42 175.6 159 52.2
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 4.1e-39 165.6 183 43.7
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 5.4e-39 165.2 190 40.5
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 1.6e-38 163.7 145 51.0
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 9.5e-36 154.5 269 33.1
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 3.6e-35 152.5 183 41.5
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 2.3e-29 133.3 141 48.2
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 1.3e-24 117.5 112 44.6
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 5.4e-23 112.1 92 57.6
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 1.9e-20 103.6 103 48.5
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 2.1e-19 100.1 91 53.8
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 3.6e-19 99.4 67 59.7
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 6.0e-14 82.0 95 46.3
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 6.0e-14 82.0 71 47.9
SHI28813 Sapria himalayana HOM05D006653 ORTHO05D008346 3.6e-11 72.8 123 34.1
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 4.2e-07 59.3 93 40.9
Manes.04G030750 Manihot esculenta HOM05D006653 ORTHO05D008346 5.5e-07 58.9 57 45.6
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.7e-06 56.6 47 53.2


User provided reference genes

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