Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.6e-94 349.4 170 100.0
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.8e-88 328.2 172 93.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 4.8e-83 311.2 170 88.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 7.0e-74 280.8 172 79.7
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 2.7e-73 278.9 172 80.2
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 1.7e-72 276.2 172 79.7
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.7e-72 276.2 172 79.7
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-71 273.5 170 80.0
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.1e-71 273.5 166 81.9
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 3.2e-71 271.9 170 79.4
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 8.0e-70 267.3 170 78.8
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-69 266.5 170 78.2
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 8.8e-69 263.8 170 76.5
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.8e-68 260.4 154 80.5
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 8.3e-67 257.3 170 77.1
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 4.5e-65 251.5 170 74.1
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.2e-53 211.5 169 65.1
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 3.4e-52 208.8 170 65.9
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 5.7e-52 208.0 161 68.9
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 9.8e-52 207.2 170 67.1
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 9.8e-52 207.2 169 64.5
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 9.8e-52 207.2 169 64.5
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-51 206.8 170 65.9
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-51 205.7 159 65.4
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 2.9e-51 205.7 159 65.4
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.9e-51 205.7 171 64.9
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.1e-50 201.8 174 62.1
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 4.1e-50 201.8 163 65.6
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.0e-50 201.1 170 64.1
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 7.0e-50 201.1 161 66.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.7e-49 199.1 169 62.7
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 4.6e-49 198.4 177 63.3
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-43 179.5 147 66.0
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-43 179.5 154 62.3
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.7e-43 178.7 159 60.4
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.7e-40 169.9 151 58.3
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.3e-40 169.5 156 56.4
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 7.3e-39 164.5 97 80.4
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 8.1e-38 161.0 146 57.5
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-37 160.2 156 53.2
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 55.3
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.6e-36 156.0 155 54.8
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 55.3
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.6e-36 156.0 155 54.8
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 55.3
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.6e-36 156.0 155 54.8
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 55.3
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 55.3
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.8e-36 154.8 152 54.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 7.5e-36 154.5 133 58.6
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.2e-35 152.9 152 55.3
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.2e-34 149.1 152 53.9
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 4.1e-34 148.7 156 51.3
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-33 146.7 152 52.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-32 143.7 144 52.1
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.2e-30 137.1 146 52.1
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 6.2e-30 134.8 102 66.7
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.7e-25 119.4 167 41.3
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 6.0e-25 118.2 166 41.0
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 1.0e-24 117.5 134 45.5
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.0e-24 117.5 174 39.7
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.7e-24 116.7 137 47.4
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 3.9e-24 115.5 171 39.8
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 3.9e-24 115.5 150 44.0
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 5.1e-24 115.2 130 46.2
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.1e-24 115.2 164 40.2
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 6.6e-24 114.8 142 41.5
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.5e-23 113.6 141 43.3
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.5e-23 113.6 157 42.0
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.9e-23 113.2 140 42.1
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.5e-23 112.8 137 43.1
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 3.3e-23 112.5 142 45.8
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 3.3e-23 112.5 144 43.8
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.6e-23 111.7 160 42.5
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 5.6e-23 111.7 166 44.0
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 5.6e-23 111.7 168 39.3
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 5.6e-23 111.7 177 41.8
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 7.3e-23 111.3 175 37.1
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 7.3e-23 111.3 182 39.6
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 7.3e-23 111.3 137 44.5
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.6e-22 110.2 149 43.0
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.6e-22 110.2 142 45.8
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.1e-22 109.8 140 45.0
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 2.8e-22 109.4 159 41.5
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.8e-22 109.4 141 44.7
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 3.6e-22 109.0 166 41.0
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.6e-22 109.0 141 44.7
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 4.7e-22 108.6 144 41.7
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 4.7e-22 108.6 144 41.7
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 4.7e-22 108.6 152 38.8
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.7e-22 108.6 160 43.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.7e-22 108.6 138 42.0
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.7e-22 108.6 138 42.0
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 6.2e-22 108.2 186 38.2
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 8.1e-22 107.8 132 43.9
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.1e-21 107.5 137 41.6
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.4e-21 107.1 158 40.5
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.8e-21 106.7 141 44.0
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.8e-21 106.7 136 44.1
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.4e-21 106.3 145 42.8
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.4e-21 106.3 139 41.0
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.1e-21 105.9 167 38.9
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 3.1e-21 105.9 138 39.9
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.1e-21 105.9 134 41.8
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 5.2e-21 105.1 182 39.6
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 5.2e-21 105.1 137 40.9
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.9e-21 104.8 181 37.6
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 6.9e-21 104.8 178 36.5
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 6.9e-21 104.8 182 39.6
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 8.9e-21 104.4 161 40.4
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 8.9e-21 104.4 149 40.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.2e-20 104.0 165 40.6
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.2e-20 104.0 139 40.3
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 2.0e-20 103.2 150 42.7
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.6e-20 102.8 150 41.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.6e-20 102.8 164 40.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.6e-20 102.8 139 40.3
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 2.6e-20 102.8 132 43.2
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 3.4e-20 102.4 168 36.9
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.4e-20 102.1 158 38.6
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.4e-20 102.1 158 38.6
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 5.8e-20 101.7 123 44.7
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 5.8e-20 101.7 169 39.6
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 5.8e-20 101.7 161 37.3
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 7.6e-20 101.3 135 41.5
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 7.6e-20 101.3 162 39.5
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.3e-19 100.5 138 42.0
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.3e-19 100.5 138 42.0
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.3e-19 100.5 149 43.0
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.7e-19 100.1 139 42.4
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 2.9e-19 99.4 170 37.6
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.9e-19 99.4 128 43.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 3.8e-19 99.0 178 38.8
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 3.8e-19 99.0 179 38.5
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.8e-19 99.0 148 40.5
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.8e-19 99.0 165 35.8
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 4.9e-19 98.6 148 38.5
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 8.4e-19 97.8 193 35.8
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 8.4e-19 97.8 146 39.7
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 8.4e-19 97.8 143 40.6
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 8.4e-19 97.8 166 35.5
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.1e-18 97.4 168 35.7
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.1e-18 97.4 133 41.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-18 97.1 148 37.8
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.9e-18 96.7 154 40.9
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.9e-18 96.7 147 38.8
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.4e-18 96.3 138 44.2
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 2.4e-18 96.3 167 36.5
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.4e-18 96.3 184 34.2
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 2.4e-18 96.3 158 37.3
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.2e-18 95.9 144 38.9
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.2e-18 95.9 132 40.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.2e-18 95.9 132 40.9
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.2e-18 95.5 149 38.9
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 4.2e-18 95.5 141 41.8
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 5.4e-18 95.1 138 39.9
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 5.4e-18 95.1 130 39.2
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 5.4e-18 95.1 165 35.2
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 7.1e-18 94.7 159 40.3
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.2e-17 94.0 128 42.2
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.6e-17 93.6 162 37.0
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 2.1e-17 93.2 183 34.4
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 2.1e-17 93.2 167 35.3
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 3.5e-17 92.4 133 38.3
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 3.5e-17 92.4 162 37.7
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 3.5e-17 92.4 167 35.3
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.0e-16 90.9 154 37.7
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.3e-16 89.7 152 38.2
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 6.6e-16 88.2 192 33.9
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 8.7e-16 87.8 124 41.9
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 8.7e-16 87.8 133 39.1
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.5e-15 87.0 144 36.8
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.1e-14 83.2 91 45.1
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.1e-13 80.9 180 36.1
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 4.0e-13 79.0 103 45.6
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.5e-12 77.0 148 31.8
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 4.9e-11 72.0 94 46.8
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.4e-10 69.7 111 35.1
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 3.2e-10 69.3 66 57.6
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.2e-09 67.4 105 35.2
Dinv34907 Davidia involucrata HOM05D003328 ORTHO05D003722 2.1e-06 56.6 120 32.5


User provided reference genes

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