Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.8e-251 872.1 436 100.0
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.1e-237 826.2 436 94.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.2e-226 789.6 436 90.6
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.0e-225 786.6 442 90.7
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.6e-223 779.2 437 89.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 8.8e-222 773.5 439 88.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 5.3e-211 737.6 437 84.4
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-205 718.0 436 81.7
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-204 716.5 436 81.0
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 7.0e-203 710.7 436 80.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-202 709.9 436 82.1
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-202 708.8 436 80.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-201 706.1 436 80.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 2.5e-200 702.2 437 78.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 9.5e-200 700.3 437 78.7
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 9.5e-200 700.3 437 78.3
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.5e-197 693.0 437 77.8
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 7.5e-197 690.6 437 77.6
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 7.5e-197 690.6 437 77.6
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-195 685.6 439 78.6
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 7.3e-192 674.1 437 77.1
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 7.3e-192 674.1 437 77.1
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.0e-189 666.0 437 75.5
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 7.5e-189 664.1 437 75.5
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-184 649.8 436 74.1
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.1e-182 642.1 439 74.9
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.0e-181 639.4 442 73.8
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.8e-175 619.0 439 72.7
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 8.1e-175 617.5 439 72.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.4e-174 616.7 439 73.1
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.6e-173 612.5 440 71.6
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 3.0e-169 599.0 417 72.9
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-169 597.8 438 70.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 6.6e-169 597.8 438 70.1
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.6e-169 597.8 438 71.0
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.5e-168 596.7 438 69.9
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-168 595.5 438 69.9
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.1e-160 570.5 468 62.6
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.1e-155 553.9 468 60.7
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 9.6e-152 540.8 466 57.9
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 8.1e-151 537.7 466 59.0
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.4e-149 532.3 466 58.8
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 7.6e-149 531.2 466 58.4
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.3e-148 530.4 468 58.1
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.9e-148 529.3 465 59.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.8e-148 528.9 467 57.2
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.9e-148 528.5 458 58.3
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 6.4e-148 528.1 463 58.5
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-147 527.3 458 58.3
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.1e-147 527.3 437 60.6
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.4e-147 526.2 466 57.1
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.2e-147 525.4 464 58.0
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.4e-147 525.0 458 58.1
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.4e-147 525.0 464 58.0
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-146 523.9 467 56.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.1e-146 523.1 463 57.5
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.5e-146 522.3 466 56.4
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 4.6e-146 521.9 442 59.3
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 4.6e-146 521.9 470 56.0
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.3e-145 520.4 467 55.5
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.0e-145 519.2 464 57.5
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.9e-145 518.8 468 56.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-144 517.3 465 56.3
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.5e-144 516.9 467 57.8
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.6e-144 515.0 458 56.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 5.6e-144 515.0 467 56.5
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 7.4e-144 514.6 469 56.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.8e-143 512.7 467 55.7
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 6.2e-143 511.5 473 55.0
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 6.2e-143 511.5 467 55.2
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.1e-142 509.2 473 53.9
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.5e-141 506.9 449 57.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.0e-141 506.5 466 54.9
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.5e-141 505.4 458 55.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 7.6e-141 504.6 473 55.4
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 7.6e-141 504.6 468 55.6
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.9e-140 502.7 465 54.8
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.9e-140 502.7 467 54.8
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 6.4e-140 501.5 470 54.7
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.1e-138 496.5 444 57.9
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.0e-137 494.2 452 54.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 3.9e-137 492.3 464 53.7
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 5.1e-137 491.9 470 52.3
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 8.7e-137 491.1 477 53.5
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.9e-136 490.0 468 53.6
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 9.6e-136 487.6 466 54.9
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.1e-135 486.5 451 53.9
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.1e-134 484.2 455 53.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.1e-134 484.2 459 53.8
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.4e-134 483.8 473 53.3
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.4e-134 483.8 469 52.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 6.9e-134 481.5 473 52.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.2e-133 480.7 454 54.4
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.0e-133 479.9 454 53.7
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.3e-132 477.2 454 53.5
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.7e-132 476.9 470 52.3
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.2e-132 476.5 472 53.0
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.8e-132 475.7 470 53.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 6.5e-132 474.9 464 52.8
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 7.1e-131 471.5 454 52.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 9.3e-131 471.1 451 52.5
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 4.6e-130 468.8 471 53.1
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.1e-130 468.4 450 52.4
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.8e-129 466.8 455 53.6
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.3e-129 466.5 473 52.2
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.3e-129 466.5 447 53.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 3.9e-129 465.7 462 53.7
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.9e-128 463.4 469 52.0
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 4.3e-128 462.2 438 57.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 7.4e-128 461.5 463 51.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.8e-127 458.8 324 71.0
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.4e-126 456.4 463 51.6
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.4e-126 456.4 445 51.9
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 5.3e-126 455.3 465 52.0
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.9e-126 454.9 449 51.2
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.2e-125 454.1 448 54.2
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.0e-125 453.4 470 49.6
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.0e-124 451.1 456 50.7
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.8e-124 449.1 467 50.7
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.8e-124 449.1 447 51.5
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 6.5e-124 448.4 452 49.1
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 8.5e-124 448.0 471 52.2
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.4e-123 447.2 449 51.4
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.9e-123 446.8 464 50.4
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.9e-123 446.8 444 51.8
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.5e-123 446.4 465 50.3
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 7.2e-123 444.9 448 51.6
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 3.6e-122 442.6 466 51.5
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.6e-122 442.2 467 49.7
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.1e-122 441.8 449 49.9
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.0e-121 441.0 465 50.8
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.4e-121 440.7 447 50.6
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.8e-121 440.3 433 52.0
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 8.8e-121 438.0 433 52.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 5.7e-120 435.3 444 50.9
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.3e-119 431.8 462 49.6
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 5.0e-116 422.2 445 49.0
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.6e-114 417.2 441 49.2
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 9.7e-112 407.9 467 46.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.0e-109 400.2 400 51.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 3.6e-106 389.4 380 52.6
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.1e-102 376.3 441 46.5
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 4.1e-102 375.9 417 47.5
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.1e-102 375.9 459 44.0
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 9.1e-102 374.8 431 45.9
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 2.7e-98 363.2 301 59.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 2.7e-98 363.2 301 59.1
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 7.0e-94 348.6 425 43.8
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.5e-91 340.1 427 42.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.7e-88 328.9 468 40.2
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.2e-87 327.0 430 41.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.3e-87 325.5 431 41.3
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-86 323.9 453 40.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.0e-81 306.6 203 74.9
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 4.0e-81 306.2 203 74.9
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.4e-78 297.0 419 40.1
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 3.3e-67 260.0 164 79.9
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.9e-60 236.5 338 44.1
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.1e-58 230.7 331 38.1
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.9e-57 225.3 212 52.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-53 214.2 277 48.4
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.2e-48 198.4 203 53.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.0e-45 186.0 163 54.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 6.6e-44 182.6 201 47.8
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.2e-29 135.2 123 61.8
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 5.1e-28 129.8 128 49.2
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.6e-27 126.3 337 29.4
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 4.8e-26 123.2 88 71.6
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.6e-24 117.5 90 70.0
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 1.8e-17 94.7 108 49.1
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 3.1e-17 94.0 63 77.8
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-10 71.6 47 74.5
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-09 66.6 135 33.3


User provided reference genes

Program Settings