Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 2.2e-249 865.1 437 100.0
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 2.8e-236 821.6 425 97.4
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 1.4e-206 723.0 429 86.2
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 2.7e-202 708.8 421 85.0
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 4.0e-198 694.9 433 82.4
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 1.3e-196 689.9 433 82.2
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 5.0e-193 677.9 421 82.2
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 7.3e-192 674.1 423 81.3
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 1.4e-190 669.8 423 81.3
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 4.9e-188 661.4 423 80.6
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 2.4e-187 659.1 423 80.6
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 3.9e-185 651.7 428 79.4
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 2.0e-181 639.4 431 75.4
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 7.8e-162 574.3 426 70.2
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 7.1e-139 498.0 435 57.5
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 5.1e-137 491.9 432 58.6
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 7.4e-136 488.0 416 57.5
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 1.6e-135 486.9 447 55.7
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 3.1e-134 482.6 416 57.2
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 4.1e-134 482.3 444 54.5
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 1.5e-133 480.3 419 56.6
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 3.4e-133 479.2 422 56.9
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 1.3e-132 477.2 428 56.8
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 2.9e-132 476.1 422 56.6
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 1.4e-131 473.8 430 55.6
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 2.1e-130 469.9 436 54.6
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 4.6e-130 468.8 422 55.9
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 7.9e-130 468.0 432 54.2
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 1.4e-129 467.2 429 54.5
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 4.3e-128 462.2 420 55.7
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 1.3e-127 460.7 436 53.4
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.7e-127 459.1 429 54.5
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 1.4e-126 457.2 429 53.6
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.1e-126 456.1 429 54.5
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 5.3e-126 455.3 431 54.1
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.9e-126 454.9 408 55.4
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.5e-125 453.8 418 54.5
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.5e-125 453.8 418 54.5
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.6e-125 453.0 411 55.2
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 5.9e-125 451.8 446 52.5
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 7.7e-125 451.4 422 52.4
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 1.7e-124 450.3 419 54.2
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 2.9e-124 449.5 422 55.2
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 5.0e-124 448.7 474 49.8
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 8.5e-124 448.0 425 53.6
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 1.1e-123 447.6 426 55.2
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 3.2e-123 446.0 422 55.0
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 5.5e-123 445.3 422 54.3
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 2.1e-122 443.4 420 52.9
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 2.7e-122 443.0 419 53.5
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 4.7e-122 442.2 419 53.7
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.8e-121 440.3 425 52.5
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 5.1e-121 438.7 422 53.8
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 6.7e-121 438.3 417 52.5
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 6.7e-121 438.3 436 52.8
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 1.1e-120 437.6 417 54.2
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 7.4e-120 434.9 441 52.8
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 9.7e-120 434.5 408 53.9
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 1.7e-119 433.7 419 54.2
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 2.2e-119 433.3 422 52.6
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 3.7e-119 432.6 419 52.7
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 3.7e-119 432.6 426 54.0
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 8.2e-119 431.4 422 54.7
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 1.4e-118 430.6 422 53.1
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 5.3e-118 428.7 411 53.5
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 7.0e-118 428.3 419 54.4
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 1.2e-117 427.6 427 52.5
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 2.6e-117 426.4 426 51.6
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 1.0e-116 424.5 413 53.0
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 2.9e-116 422.9 414 53.1
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 1.5e-115 420.6 415 51.6
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 4.2e-115 419.1 430 52.3
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 1.2e-114 417.5 417 52.0
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 1.2e-114 417.5 408 53.4
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.6e-114 417.2 433 51.3
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 7.4e-112 408.3 445 51.0
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.3e-111 407.5 422 49.8
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 2.2e-111 406.8 366 56.0
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 2.2e-111 406.8 412 52.4
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 8.2e-111 404.8 432 51.2
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 1.6e-109 400.6 302 63.2
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 3.5e-109 399.4 408 49.5
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.7e-109 398.3 419 50.6
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 1.7e-108 397.1 431 50.8
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 2.2e-108 396.7 430 51.2
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 1.9e-107 393.7 413 51.1
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 5.5e-107 392.1 367 53.7
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 4.7e-106 389.0 416 51.9
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 2.6e-104 383.3 424 48.8
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 9.7e-104 381.3 410 48.8
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 3.5e-101 372.9 473 45.7
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 5.9e-101 372.1 288 58.7
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 2.0e-96 357.1 407 45.9
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 3.7e-95 352.8 406 45.3
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 7.0e-94 348.6 441 44.4
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.7e-92 344.0 361 52.9
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 8.0e-90 335.1 425 44.2
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 1.2e-88 331.3 252 70.6
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 1.6e-85 320.9 428 40.9
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 1.3e-84 317.8 420 48.6
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 8.6e-84 315.1 341 50.1
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 3.1e-81 306.6 311 52.1
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 6.2e-74 282.3 427 40.5
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 5.4e-54 216.1 287 39.7
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 1.1e-51 208.4 351 35.3
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 5.6e-51 206.1 250 41.6
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 8.1e-50 202.2 147 58.5
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 1.8e-49 201.1 137 64.2
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.9e-46 191.0 202 45.5
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 2.4e-46 190.7 162 60.5
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 5.4e-46 189.5 259 43.2
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 1.2e-45 188.3 382 35.1
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.7e-44 184.5 144 58.3
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 2.0e-40 171.0 227 47.6
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.3e-39 168.3 133 55.6
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 1.9e-38 164.5 137 57.7
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 3.4e-32 143.7 160 48.8
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.9e-30 137.9 247 33.6
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 1.1e-19 102.1 162 40.7
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 1.5e-16 91.7 58 69.0
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 2.0e-16 91.3 58 69.0
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 5.5e-14 83.2 261 22.6
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 1.3e-10 72.0 213 26.8


User provided reference genes

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