Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 8.9e-26 119.4 56 100.0
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 2.0e-25 118.2 56 96.4
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 1.8e-23 111.7 53 94.3
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 1.0e-21 105.9 53 88.7
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 2.5e-20 101.3 49 91.8
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 9.5e-20 99.4 52 84.6
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 9.5e-20 99.4 52 84.6
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 9.5e-20 99.4 52 84.6
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 2.8e-19 97.8 51 78.4
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 3.6e-19 97.4 52 82.7
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 3.6e-19 97.4 52 82.7
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 4.7e-19 97.1 51 84.3
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 2.0e-17 91.7 46 84.8
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 6.4e-16 86.7 52 65.4
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 6.4e-16 86.7 52 65.4
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 8.3e-16 86.3 52 65.4
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 1.1e-15 85.9 48 72.9
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 1.4e-15 85.5 45 75.6
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 1.4e-15 85.5 50 68.0
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 1.4e-15 85.5 52 71.2
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 1.9e-15 85.1 47 74.5
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 2.4e-15 84.7 49 69.4
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 4.1e-15 84.0 50 66.0
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 7.0e-15 83.2 48 68.8
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 1.2e-14 82.4 54 66.7
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 1.6e-14 82.0 48 66.7
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 2.0e-14 81.6 49 63.3
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 2.7e-14 81.3 48 66.7
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 2.7e-14 81.3 53 60.4
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 2.7e-14 81.3 47 70.2
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 4.6e-14 80.5 47 66.0
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 6.0e-14 80.1 47 70.2
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 7.8e-14 79.7 50 62.0
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 7.8e-14 79.7 51 60.8
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 7.8e-14 79.7 46 69.6
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 1.0e-13 79.3 48 64.6
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.7e-13 78.6 48 64.6
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.7e-13 78.6 48 64.6
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 2.3e-13 78.2 48 66.7
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 3.0e-13 77.8 49 63.3
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 5.0e-13 77.0 49 63.3
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 5.0e-13 77.0 45 68.9
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 6.6e-13 76.6 50 62.0
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 6.6e-13 76.6 48 60.4
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 6.6e-13 76.6 47 63.8
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 1.1e-12 75.9 51 56.9
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 1.1e-12 75.9 46 65.2
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.1e-12 75.9 48 60.4
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 1.5e-12 75.5 48 60.4
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 1.5e-12 75.5 48 64.6
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 1.9e-12 75.1 42 69.0
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 5.6e-12 73.6 41 70.7
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 7.3e-12 73.2 52 59.6
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 9.5e-12 72.8 49 63.3
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 1.6e-11 72.0 46 65.2
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 1.6e-11 72.0 41 68.3
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 2.8e-11 71.2 52 61.5
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 6.2e-11 70.1 43 65.1
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 8.0e-11 69.7 46 56.5
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 1.1e-10 69.3 48 58.3
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 1.4e-10 68.9 38 71.1
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 2.3e-10 68.2 48 60.4
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 4.0e-10 67.4 40 65.0
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 1.5e-09 65.5 67 46.3
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 3.2e-07 57.8 54 50.0


User provided reference genes

Program Settings