Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.1e-202 708.8 352 100.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 3.8e-183 644.8 351 91.2
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 7.0e-169 597.4 350 87.4
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 6.5e-167 590.9 352 86.4
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.6e-163 578.9 351 85.8
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 8.3e-162 573.9 292 95.9
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-161 573.5 364 81.9
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-160 570.1 365 81.9
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.3e-159 566.6 351 82.3
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-156 557.0 355 82.3
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 5.7e-155 551.2 351 82.6
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.3e-151 540.0 351 79.5
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.2e-150 534.3 353 77.9
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 9.5e-150 533.9 352 79.0
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.0e-148 528.9 355 75.8
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.7e-146 523.1 357 77.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.0e-144 516.2 339 79.4
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 3.3e-126 455.7 330 67.9
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 4.0e-124 448.7 350 66.0
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 8.9e-124 447.6 291 73.5
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.2e-123 447.2 300 70.3
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.5e-123 446.8 280 76.1
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.5e-123 446.8 297 73.4
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 4.4e-123 445.3 294 73.1
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.7e-122 443.4 292 73.3
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.7e-122 443.4 283 75.3
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.2e-122 443.0 348 64.9
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.9e-122 442.6 334 66.2
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.7e-122 442.2 341 66.0
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 8.4e-122 441.0 350 64.0
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 8.4e-122 441.0 331 66.2
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.1e-121 440.7 305 69.2
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.1e-121 440.7 304 69.4
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.4e-121 440.3 322 67.1
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 9.2e-121 437.6 293 72.4
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.2e-120 437.2 352 63.6
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.6e-120 436.8 354 63.8
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 3.5e-120 435.6 303 71.3
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.3e-119 433.7 324 67.0
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.7e-119 433.3 355 63.1
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 3.9e-119 432.2 347 62.5
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 6.6e-119 431.4 300 70.7
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.5e-118 430.3 368 63.9
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.5e-118 430.3 339 64.0
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.9e-118 429.9 300 69.7
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.3e-118 429.1 292 71.2
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 9.6e-118 427.6 298 71.5
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 2.1e-117 426.4 350 63.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.8e-117 426.0 354 61.6
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.6e-117 425.6 350 63.4
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 6.2e-117 424.9 346 61.6
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.8e-116 423.3 317 65.9
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.4e-116 422.9 352 63.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.2e-116 421.8 308 67.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 6.8e-116 421.4 298 69.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.2e-115 420.6 316 66.8
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.2e-115 420.6 296 67.6
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.4e-115 418.7 276 72.1
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 5.8e-115 418.3 350 61.1
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.9e-115 417.5 352 62.5
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.7e-114 416.8 346 61.3
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.2e-114 416.4 352 61.9
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.9e-114 415.2 298 68.5
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.1e-113 414.1 359 63.2
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.4e-113 413.7 291 68.4
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 5.4e-113 411.8 344 62.2
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.6e-112 410.2 266 72.6
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.6e-112 410.2 330 63.3
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.3e-111 407.1 291 68.0
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.7e-111 406.8 323 61.9
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.1e-111 405.2 287 67.2
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.5e-110 402.9 295 66.1
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.6e-109 400.2 270 70.7
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 2.8e-109 399.4 346 61.6
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.6e-109 399.1 291 67.7
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.6e-109 399.1 268 70.1
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 8.1e-109 397.9 293 66.2
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.8e-108 396.7 299 64.9
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 3.1e-108 396.0 267 72.7
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 4.0e-108 395.6 326 60.4
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 5.3e-108 395.2 343 59.5
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 6.9e-108 394.8 361 60.1
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 9.0e-108 394.4 296 65.2
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.2e-107 394.0 280 68.2
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.5e-107 393.7 285 66.3
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 7.6e-107 391.3 280 67.5
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 7.6e-107 391.3 280 67.9
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 7.6e-107 391.3 316 62.3
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.2e-106 389.8 328 61.3
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.9e-106 389.4 342 58.5
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 6.4e-106 388.3 294 66.0
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 8.4e-106 387.9 291 66.0
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.7e-103 380.2 266 68.0
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.7e-103 380.2 341 58.1
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 3.0e-103 379.4 265 66.4
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.9e-103 379.0 321 61.4
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 3.9e-103 379.0 333 58.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 5.6e-102 375.2 263 68.8
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.1e-101 373.2 346 57.5
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 3.6e-101 372.5 312 60.6
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 4.8e-101 372.1 282 66.0
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 6.2e-101 371.7 285 64.9
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.1e-100 370.9 185 95.1
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 1.1e-100 370.9 355 56.9
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.4e-100 370.5 294 62.6
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 2.4e-100 369.8 237 84.0
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 4.0e-100 369.0 305 61.3
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 9.9e-99 364.4 342 56.4
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.8e-98 362.5 293 62.5
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.4e-98 361.3 298 61.4
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 5.5e-97 358.6 230 73.5
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.5e-94 349.7 358 53.6
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 9.0e-92 341.3 368 52.7
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.2e-91 340.9 321 55.8
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.6e-91 339.7 335 54.6
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.7e-90 337.0 325 55.4
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 4.2e-89 332.4 319 54.2
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.2e-88 330.9 298 57.0
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.6e-88 330.5 305 56.7
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.6e-88 330.5 323 56.0
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.7e-88 329.7 263 62.7
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.3e-87 327.4 257 58.4
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.8e-87 327.0 278 56.1
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 8.7e-87 324.7 257 59.5
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.8e-84 317.0 304 53.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.0e-79 301.2 280 55.7
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.3e-79 300.1 227 64.3
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 5.9e-75 285.4 174 81.6
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.1e-73 281.2 255 51.8
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.4e-73 280.8 303 53.1
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.4e-73 280.8 270 55.9
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.2e-73 279.6 294 53.7
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.6e-72 276.2 298 50.3
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 3.6e-72 276.2 261 52.1
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.0e-70 270.4 312 51.0
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 2.5e-70 270.0 381 43.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 7.4e-70 268.5 292 49.0
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.7e-69 266.2 292 49.7
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.2e-67 261.2 207 64.7
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.2e-66 256.9 285 48.8
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.2e-65 253.1 344 43.3
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 9.4e-65 251.5 177 68.9
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 8.8e-63 245.0 178 67.4
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.3e-61 241.1 176 65.3
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.7e-61 240.7 179 64.2
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 1.7e-61 240.7 179 65.9
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.2e-61 240.4 241 55.6
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.1e-60 236.1 184 64.1
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.3e-60 235.7 184 63.6
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.5e-57 227.6 146 76.7
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 4.0e-55 219.5 136 81.6
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 2.0e-54 217.2 174 59.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 1.3e-53 214.5 490 32.0
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 2.8e-53 213.4 155 66.5
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.1e-52 209.5 246 48.8
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 7.0e-52 208.8 257 40.9
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 4.7e-48 196.1 269 39.8
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.4e-46 189.9 343 33.2
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 8.3e-45 185.3 166 59.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 2.0e-43 180.6 112 71.4
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 3.0e-39 166.8 109 70.6
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.0e-39 166.8 127 61.4
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.0e-39 166.4 106 70.8
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.4e-38 162.9 132 59.8
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.7e-38 162.5 91 84.6
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.4e-36 157.9 104 72.1
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.0e-31 141.7 104 67.3
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.8e-30 135.2 98 62.2
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.2e-29 134.0 186 45.2
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.9e-29 133.7 114 57.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 2.4e-28 130.6 138 50.0
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 5.6e-25 119.4 90 62.2
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.6e-19 99.8 76 57.9
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.3e-15 87.4 60 66.7
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 1.2e-14 85.1 55 70.9
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.8e-14 82.0 51 72.5
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 7.1e-12 75.9 49 75.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 6.2e-08 62.8 45 64.4
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 1.4e-07 61.6 106 38.7
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 3.1e-07 60.5 43 65.1
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 8.9e-07 58.9 37 75.7


User provided reference genes

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