Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.1e-268 929.5 493 100.0
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.5e-206 721.5 459 86.9
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 1.9e-196 689.5 459 79.5
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.1e-180 637.1 465 76.8
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.4e-178 630.2 496 73.0
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.4e-178 630.2 461 73.5
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.8e-178 629.8 496 71.8
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 4.1e-167 592.0 465 72.9
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 2.0e-161 573.2 480 69.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.9e-157 559.3 417 75.1
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 6.0e-150 535.0 421 72.4
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 9.5e-140 501.1 475 59.8
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 6.0e-110 402.1 467 50.3
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 2.3e-109 400.2 469 50.1
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 6.7e-109 398.7 465 54.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 9.6e-108 394.8 499 49.1
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.3e-107 394.4 463 50.5
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 3.8e-104 382.9 483 48.7
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 8.4e-104 381.7 484 48.6
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.9e-103 380.6 435 48.5
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 3.2e-103 379.8 506 48.0
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.6e-102 377.5 462 50.6
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 2.7e-102 376.7 485 46.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 3.5e-102 376.3 497 49.5
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 3.5e-102 376.3 421 50.1
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 3.5e-102 376.3 490 46.7
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 3.5e-102 376.3 459 48.8
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 6.0e-102 375.6 431 53.8
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 6.0e-102 375.6 443 48.1
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.0e-101 374.8 450 48.2
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.0e-101 374.8 474 47.9
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.3e-101 373.6 463 49.2
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 6.7e-101 372.1 497 48.3
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 6.7e-101 372.1 460 48.7
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.5e-100 370.9 456 46.1
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 2.5e-100 370.2 497 48.5
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.3e-100 369.8 496 47.6
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 3.3e-100 369.8 447 49.0
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 4.3e-100 369.4 392 52.3
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.3e-99 367.9 440 50.2
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.6e-99 367.5 468 45.1
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.8e-99 366.7 492 48.0
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.8e-99 366.7 465 48.8
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.7e-99 366.3 470 50.9
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 8.2e-99 365.2 480 46.7
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 2.4e-98 363.6 479 46.3
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 4.0e-98 362.8 376 52.1
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 9.0e-98 361.7 401 50.1
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.5e-97 360.9 437 49.7
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.5e-97 360.9 495 47.3
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.6e-97 360.1 510 44.1
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 2.6e-97 360.1 417 53.2
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 4.5e-97 359.4 490 44.1
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 7.6e-97 358.6 451 47.7
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.3e-96 357.8 332 55.1
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.2e-96 357.1 331 55.0
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 8.4e-96 355.1 329 55.0
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 1.1e-95 354.8 463 48.6
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.9e-95 354.0 332 54.8
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 3.2e-95 353.2 472 46.8
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 7.1e-95 352.1 401 48.4
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.2e-94 351.3 331 55.0
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.2e-94 351.3 462 47.6
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 6.0e-94 349.0 437 48.3
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.8e-93 347.4 485 45.4
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 3.0e-93 346.7 450 46.2
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 3.0e-93 346.7 462 45.7
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 5.1e-93 345.9 456 46.1
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.3e-92 343.2 356 60.1
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.6e-91 340.9 467 44.8
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 4.8e-91 339.3 444 45.3
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 2.4e-90 337.0 540 42.6
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 4.1e-90 336.3 456 46.1
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 6.9e-90 335.5 412 50.7
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.9e-90 335.5 456 45.8
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.5e-89 334.3 335 52.8
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.0e-89 334.0 458 45.9
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 2.6e-89 333.6 324 54.6
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.1e-87 328.2 399 46.6
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 4.2e-87 326.2 460 45.2
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 4.2e-87 326.2 456 45.4
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 3.6e-86 323.2 418 49.0
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 5.1e-85 319.3 435 47.1
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 2.0e-84 317.4 321 51.1
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.4e-82 311.2 497 42.3
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 2.4e-82 310.5 348 49.1
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.9e-82 308.9 447 41.4
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 7.7e-81 305.4 465 40.4
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 8.5e-80 302.0 422 44.8
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 4.7e-78 296.2 329 50.5
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 6.7e-77 292.4 477 39.4
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.0e-76 290.8 350 46.3
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.2e-72 277.3 473 39.3
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.8e-66 257.7 281 48.4
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 4.1e-66 256.5 299 47.5
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 9.1e-66 255.4 427 44.3
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 4.7e-62 243.0 351 44.2
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 6.8e-61 239.2 419 39.4
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 8.8e-61 238.8 313 44.4
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 4.4e-60 236.5 319 42.3
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.2e-57 228.4 321 39.6
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.6e-57 228.0 334 43.7
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.3e-56 224.9 429 36.4
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.2e-51 207.6 307 39.4
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.8e-46 190.7 148 69.6
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.0e-45 188.7 191 57.1
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.8e-45 188.0 228 44.3
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 4.5e-41 173.3 165 53.3
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.9e-40 170.6 203 46.3
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 4.4e-36 156.8 241 36.5
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 5.4e-34 149.8 253 35.2
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 7.0e-34 149.4 110 63.6
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 4.3e-31 140.2 134 57.5
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 8.0e-30 136.0 124 54.0
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.5e-28 131.7 171 45.6
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.0e-28 131.3 113 57.5
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 4.3e-23 113.6 261 32.6
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 7.3e-23 112.8 152 42.1
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 4.7e-22 110.2 87 59.8
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 4.7e-22 110.2 255 34.1
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.3e-19 102.1 147 42.9
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.3e-19 102.1 147 42.9
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 8.3e-19 99.4 60 76.7
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 2.1e-14 84.7 64 57.8
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 5.2e-13 80.1 50 72.0
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 9.9e-12 75.9 105 34.3
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-10 71.2 46 69.6
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 5.4e-10 70.1 70 45.7
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 3.5e-09 67.4 46 63.0
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 7.8e-09 66.2 184 36.4
AL6G43530 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.5e-07 61.2 90 50.0


User provided reference genes

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