Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 1.8e-38 162.2 85 100.0
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 6.4e-36 153.7 85 92.9
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 3.9e-33 144.4 86 88.4
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 1.6e-31 139.0 85 84.7
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 1.1e-30 136.3 85 82.4
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 1.4e-30 136.0 86 84.9
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 3.1e-30 134.8 86 83.7
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 4.0e-30 134.4 86 83.7
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.0e-30 134.4 86 83.7
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 4.0e-30 134.4 86 83.7
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 1.2e-29 132.9 85 81.2
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 7.6e-29 130.2 85 80.0
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 7.6e-29 130.2 70 97.1
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 2.9e-28 128.3 85 83.5
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 2.1e-26 122.1 70 91.4
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.8e-25 119.0 70 85.7
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 2.3e-25 118.6 70 88.6
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 8.7e-25 116.7 84 75.0
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 2.7e-18 95.1 73 67.1
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 2.5e-16 88.6 78 62.8
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 2.5e-16 88.6 82 54.9
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 7.4e-16 87.0 83 55.4
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 9.7e-16 86.7 83 56.6
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 4.8e-15 84.3 78 57.7
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 4.8e-15 84.3 87 55.2
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 1.1e-14 83.2 79 57.0
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 1.8e-14 82.4 78 57.7
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 3.1e-14 81.6 81 54.3
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 3.1e-14 81.6 62 67.7
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.1e-14 81.6 62 67.7
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 3.1e-14 81.6 67 62.7
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 5.3e-14 80.9 86 51.2
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 9.0e-14 80.1 68 60.3
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 1.5e-13 79.3 69 60.9
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 2.0e-13 79.0 83 51.8
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 3.4e-13 78.2 82 52.4
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 4.5e-13 77.8 73 54.8
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 4.5e-13 77.8 58 65.5
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 5.9e-13 77.4 66 59.1
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 5.9e-13 77.4 69 59.4
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 7.7e-13 77.0 71 53.5
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.0e-12 76.6 71 56.3
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 1.0e-12 76.6 76 55.3
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 1.7e-12 75.9 73 56.2
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 1.7e-12 75.9 75 53.3
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.7e-12 75.9 64 59.4
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 1.7e-12 75.9 74 58.1
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 2.9e-12 75.1 68 57.4
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 5.0e-12 74.3 67 59.7
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 5.0e-12 74.3 58 63.8
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 5.0e-12 74.3 82 50.0
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 6.5e-12 73.9 66 60.6
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.1e-11 73.2 66 57.6
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-11 73.2 112 42.9
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-11 73.2 112 42.9
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 1.1e-11 73.2 73 53.4
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.4e-11 72.8 64 60.9
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 1.9e-11 72.4 78 52.6
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 2.5e-11 72.0 71 50.7
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 3.2e-11 71.6 67 55.2
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 5.5e-11 70.9 74 54.1
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 5.5e-11 70.9 69 52.2
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 9.4e-11 70.1 80 47.5
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.7e-10 68.6 74 52.7
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 4.6e-10 67.8 77 49.4
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 4.6e-10 67.8 82 46.3
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 6.1e-10 67.4 68 54.4
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 6.1e-10 67.4 77 48.1
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 6.1e-10 67.4 72 51.4
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 3.9e-09 64.7 79 49.4
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 5.1e-09 64.3 59 57.6
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 6.7e-09 63.9 45 68.9
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 6.7e-09 63.9 85 43.5
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 8.8e-09 63.5 70 48.6
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 8.8e-09 63.5 77 46.8
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 1.1e-08 63.2 68 47.1
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 1.1e-08 63.2 67 49.3
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 1.1e-08 63.2 85 43.5
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.5e-08 62.8 71 46.5
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 1.9e-08 62.4 45 68.9
SEGI_16653 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.1e-06 56.6 70 45.7
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.8e-06 55.8 76 40.8
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 3.1e-06 55.1 66 45.5
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 4.1e-06 54.7 65 46.2
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 6.9e-06 53.9 105 33.3


User provided reference genes

Program Settings