Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 5.6e-246 854.0 481 100.0
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.1e-220 768.5 485 91.1
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 5.7e-206 721.1 490 85.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.4e-172 609.4 486 75.3
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.1e-164 583.9 486 72.8
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.9e-149 532.7 483 67.9
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 9.6e-145 517.7 487 68.8
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.8e-143 513.5 484 67.8
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 4.6e-139 498.8 489 65.4
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.5e-129 467.2 489 60.7
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.2e-123 447.6 413 63.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.0e-122 443.0 413 62.5
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 8.2e-120 434.9 416 63.5
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-119 434.5 412 64.1
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 6.9e-119 431.8 413 62.0
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.6e-118 429.9 413 61.5
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 3.9e-114 416.0 474 55.3
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.7e-112 410.6 459 58.4
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.3e-105 386.3 443 54.4
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 3.7e-96 356.3 439 53.5
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.2e-94 351.3 516 46.1
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 3.5e-94 349.7 508 46.3
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.7e-93 347.4 470 53.0
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 6.5e-93 345.5 419 52.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 8.5e-93 345.1 443 53.7
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-92 344.7 449 56.3
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 2.5e-92 343.6 453 55.8
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.1e-91 340.5 500 46.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 8.0e-91 338.6 447 52.6
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.8e-90 335.5 512 45.1
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.0e-89 334.0 513 45.0
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 3.4e-89 333.2 507 42.8
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 5.7e-89 332.4 514 44.7
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 6.3e-88 328.9 498 46.0
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 5.4e-87 325.9 505 45.3
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.2e-84 316.6 518 44.2
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.2e-84 316.6 513 44.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 4.2e-84 316.2 509 45.6
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 7.2e-84 315.5 513 43.7
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.6e-83 314.3 508 44.7
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 5.2e-82 309.3 521 43.8
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 5.2e-82 309.3 513 43.3
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.6e-81 307.0 507 44.0
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.2e-80 303.9 514 43.0
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.1e-79 299.7 517 43.1
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.1e-76 291.6 515 42.9
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 4.2e-76 289.7 508 43.7
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 5.6e-76 289.3 521 38.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 7.2e-76 288.9 517 38.7
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 6.1e-75 285.8 516 41.1
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.4e-74 284.6 505 44.2
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.0e-74 283.5 513 40.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.5e-73 281.2 502 39.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.5e-73 278.9 510 38.6
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 9.8e-73 278.5 448 44.2
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.3e-72 278.1 489 44.2
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.7e-72 277.7 428 49.5
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.7e-72 277.7 526 40.3
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.4e-71 273.9 487 43.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.2e-70 271.6 509 38.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.0e-70 270.8 496 38.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 5.9e-70 269.2 501 37.5
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 5.9e-70 269.2 487 43.1
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.6e-69 265.8 511 37.8
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 5.6e-68 262.7 505 36.4
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 9.5e-68 261.9 502 38.8
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 9.5e-68 261.9 510 38.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.6e-67 261.2 508 39.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.6e-67 261.2 512 38.5
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.1e-67 260.8 502 40.2
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.6e-67 260.0 518 41.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 8.0e-67 258.8 526 40.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.8e-66 257.7 513 39.2
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.3e-66 257.3 515 39.6
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 3.1e-66 256.9 502 38.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.1e-66 256.9 461 41.2
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.2e-66 256.1 513 38.8
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 3.4e-65 253.4 362 43.9
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.4e-65 253.1 508 39.0
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.3e-64 251.5 517 40.2
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.9e-64 249.6 496 35.9
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.4e-64 249.2 522 40.4
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 4.1e-63 246.5 505 38.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 7.0e-63 245.7 502 38.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 9.2e-63 245.4 511 37.6
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 6.0e-62 242.7 496 38.1
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.3e-61 240.7 511 38.2
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.9e-61 240.0 503 34.6
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 6.6e-61 239.2 502 37.3
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 8.6e-61 238.8 506 37.0
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 8.6e-61 238.8 505 36.6
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.9e-60 237.7 437 41.0
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.5e-60 237.3 490 40.4
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.6e-59 233.4 508 38.0
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 4.7e-59 233.0 504 36.7
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 6.2e-59 232.6 513 38.0
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 8.1e-59 232.3 505 36.2
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-58 231.9 508 38.4
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 3.4e-57 226.9 510 37.3
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 5.8e-57 226.1 514 37.2
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 5.8e-57 226.1 512 33.8
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.9e-56 223.8 513 37.6
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.4e-55 220.7 498 35.3
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.2e-55 220.3 524 34.9
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 7.1e-55 219.2 523 38.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.1e-54 217.6 515 34.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 4.6e-54 216.5 472 40.3
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.6e-54 216.5 522 33.9
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 6.0e-54 216.1 523 37.5
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 3.9e-53 213.4 521 36.1
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.1e-53 213.0 470 38.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.1e-52 211.8 465 37.8
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.5e-52 210.7 517 35.6
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.2e-51 208.4 439 35.3
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.8e-50 204.5 409 36.9
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 5.2e-50 203.0 440 37.3
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.2e-49 201.8 405 36.8
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 6.4e-48 196.1 444 37.2
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.6e-46 191.4 439 38.5
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-44 184.9 498 35.5
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.1e-43 181.0 414 37.7
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 8.1e-43 179.1 506 32.8
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 8.1e-43 179.1 530 32.1
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.8e-42 176.0 446 36.1
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.4e-41 173.7 496 35.1
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.9e-40 169.9 489 33.5
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 5.4e-39 166.4 287 39.7
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.3e-37 161.0 488 32.4
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 8.7e-37 159.1 482 32.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.7e-37 159.1 358 35.8
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 2.1e-35 154.5 423 35.5
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 3.6e-35 153.7 331 35.6
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.4e-34 151.0 379 36.1
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.4e-34 151.0 298 36.9
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 6.4e-32 142.9 427 31.6
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 3.2e-31 140.6 427 31.4
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 4.2e-31 140.2 371 35.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.5e-30 137.1 425 31.1
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.7e-29 134.8 205 44.9
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 3.1e-26 124.0 503 29.8
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 5.8e-25 119.8 115 53.9
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.9e-24 117.5 168 42.9
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 6.4e-24 116.3 438 28.8
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 4.2e-23 113.6 398 27.9
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 5.5e-23 113.2 343 32.1
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 4.6e-22 110.2 518 29.9
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.3e-21 108.6 288 30.9
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.3e-21 107.8 108 54.6
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.3e-21 107.8 491 26.7
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 3.9e-21 107.1 115 62.6
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.1e-20 105.5 202 36.6
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 1.5e-20 105.1 148 47.3
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 2.4e-18 97.8 141 44.0
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.5e-17 95.1 519 26.4
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 6.5e-16 89.7 73 64.4
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 3.5e-14 84.0 95 47.4
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.5e-12 77.8 170 30.0
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 3.3e-12 77.4 51 80.4
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.3e-12 77.4 158 32.3
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 4.3e-12 77.0 272 29.0
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 6.3e-11 73.2 219 26.5
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 5.3e-10 70.1 60 60.0
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-09 68.9 315 27.3
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.7e-08 65.1 97 36.1
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.2e-08 64.7 414 24.4
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.8e-08 63.9 203 27.6
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 3.8e-08 63.9 148 32.4
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.1e-07 62.4 97 36.1
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-07 62.0 291 25.8
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 2.5e-07 61.2 67 47.8
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 9.3e-07 59.3 375 22.4
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 2.7e-06 57.8 100 43.0


User provided reference genes

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