Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 1.3e-36 156.0 83 100.0
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 4.5e-26 120.9 83 83.1
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 4.5e-26 120.9 85 81.2
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 4.7e-23 110.9 83 72.3
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 2.0e-21 105.5 84 70.2
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 2.0e-21 105.5 84 72.6
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 4.4e-21 104.4 84 69.0
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 4.4e-21 104.4 84 69.0
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 4.8e-20 100.9 82 72.0
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 4.5e-18 94.4 83 69.9
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 5.9e-18 94.0 82 68.3
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 5.0e-17 90.9 82 64.6
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 5.0e-17 90.9 82 64.6
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 5.0e-17 90.9 82 65.9
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 6.5e-17 90.5 85 68.2
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 6.5e-17 90.5 85 68.2
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 1.1e-16 89.7 84 65.5
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 3.2e-16 88.2 83 62.7
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 3.6e-15 84.7 84 65.5
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 3.6e-15 84.7 84 65.5
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 3.6e-15 84.7 84 65.5
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 3.6e-15 84.7 84 65.5
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 2.0e-13 79.0 82 59.8
BcaC02g11900 Brassica carinata HOM05D009505 ORTHO05D007552 1.4e-11 72.8 50 76.0
BcaC02g11902 Brassica carinata HOM05D009505 ORTHO05D007552 1.4e-11 72.8 50 76.0
BolC4t22617H Brassica oleracea HOM05D009505 ORTHO05D007552 1.4e-11 72.8 50 76.0
BraA03t11324Z Brassica rapa HOM05D009505 ORTHO05D007552 2.4e-11 72.0 87 58.6
A03p20830 Brassica napus HOM05D009505 ORTHO05D007552 9.1e-11 70.1 87 57.5
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 2.0e-10 68.9 62 61.3
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.5e-10 68.2 88 50.0
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.0e-09 66.6 97 45.4
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 5.0e-09 64.3 78 51.3
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 6.5e-09 63.9 86 48.8
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 8.5e-09 63.5 93 44.1
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 8.5e-09 63.5 85 47.1
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.1e-08 63.2 86 50.0
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.5e-08 62.8 91 42.9
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.2e-08 61.6 91 42.9
BcaC02g11899 Brassica carinata HOM05D009505 ORTHO05D007552 4.2e-08 61.2 84 52.4
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 5.5e-08 60.8 98 40.8
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 5.5e-08 60.8 100 42.0
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 7.2e-08 60.5 82 47.6
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 9.4e-08 60.1 84 47.6
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 2.1e-07 58.9 96 45.8
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 3.6e-07 58.2 85 44.7
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 4.7e-07 57.8 89 43.8
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 4.7e-07 57.8 89 46.1
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 8.0e-07 57.0 93 41.9
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.8e-06 55.8 76 46.1
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.8e-06 55.8 85 41.2
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 2.3e-06 55.5 93 40.9
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 3.0e-06 55.1 91 40.7
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 3.0e-06 55.1 87 41.4
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 3.0e-06 55.1 87 41.4
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.0e-06 55.1 78 43.6
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 3.0e-06 55.1 84 41.7
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 4.0e-06 54.7 82 42.7
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 4.0e-06 54.7 89 44.9
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 5.2e-06 54.3 86 41.9
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 5.2e-06 54.3 97 39.2
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 5.2e-06 54.3 82 47.6
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 5.2e-06 54.3 89 44.9
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 5.2e-06 54.3 89 44.9
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 6.8e-06 53.9 91 47.3
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 6.8e-06 53.9 81 44.4
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 6.8e-06 53.9 94 37.2
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 8.8e-06 53.5 88 39.8


User provided reference genes

Program Settings