Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 7.0e-198 693.7 346 100.0
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.2e-186 654.1 364 90.4
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 4.4e-184 647.9 364 89.6
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.2e-183 645.6 364 88.5
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 6.6e-180 634.0 364 87.4
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.4e-177 626.3 364 85.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.5e-176 622.9 364 86.3
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.8e-176 620.9 364 84.9
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 9.9e-176 620.2 364 84.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 2.2e-175 619.0 363 85.1
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.9e-175 617.8 364 85.2
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 5.4e-174 614.4 364 84.6
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.5e-163 578.9 366 77.6
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 4.8e-162 574.7 367 77.4
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.3e-148 530.0 363 71.1
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.2e-144 516.9 363 69.7
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 2.6e-144 515.8 363 69.1
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.0e-143 513.8 365 69.0
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 8.4e-143 510.8 366 68.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 5.5e-142 508.1 363 68.0
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 5.5e-142 508.1 360 68.1
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 7.1e-142 507.7 360 66.9
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.1e-141 506.1 363 68.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.5e-141 505.4 362 66.9
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.9e-140 501.9 359 65.7
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.7e-140 501.1 361 67.3
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.7e-140 500.7 361 67.3
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.5e-139 500.0 359 65.2
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.5e-139 500.0 419 61.1
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.5e-139 499.2 362 65.5
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.7e-139 498.0 361 66.8
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 9.7e-139 497.3 361 66.2
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.2e-138 496.1 360 67.5
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.8e-138 495.7 361 65.7
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 3.7e-138 495.4 361 65.7
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 6.3e-138 494.6 371 63.6
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.8e-137 493.0 371 63.3
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.2e-136 490.3 354 66.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.2e-136 490.3 357 67.2
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 1.2e-136 490.3 371 63.6
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.9e-135 485.7 362 64.1
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.8e-135 485.3 360 64.2
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 8.5e-135 484.2 360 65.3
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 8.5e-135 484.2 368 63.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.1e-134 483.8 355 64.8
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 5.5e-134 481.5 362 65.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.1e-133 479.6 360 65.0
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 2.7e-133 479.2 372 62.6
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.6e-133 478.4 360 62.5
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 7.9e-133 477.6 365 62.7
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.3e-132 476.1 363 62.8
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.3e-132 476.1 363 63.4
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.9e-131 473.0 363 62.8
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 2.5e-131 472.6 362 64.6
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 7.4e-131 471.1 360 63.1
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.3e-130 470.3 363 63.9
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.3e-130 470.3 363 63.9
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.7e-130 469.9 362 63.8
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.2e-130 469.5 362 61.0
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.2e-130 469.5 362 61.9
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.7e-130 468.8 393 58.8
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 4.8e-130 468.4 362 61.3
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 6.3e-130 468.0 368 64.7
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 8.2e-130 467.6 356 63.5
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 8.2e-130 467.6 383 60.6
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 2.4e-129 466.1 344 65.1
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.4e-129 466.1 356 62.4
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 3.4e-128 462.2 354 62.7
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 7.7e-128 461.1 362 62.4
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.0e-127 460.7 361 64.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.3e-127 460.3 356 64.9
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 3.8e-127 458.8 360 63.1
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.8e-127 458.8 381 59.3
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 6.5e-127 458.0 356 64.0
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 8.5e-127 457.6 356 62.6
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.9e-126 456.4 362 60.2
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.9e-126 456.4 381 59.1
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.5e-126 456.1 381 59.1
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 9.4e-126 454.1 362 62.4
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.1e-125 453.0 393 58.3
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.7e-125 452.6 358 60.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.7e-125 451.8 362 61.3
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.0e-124 450.7 380 59.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.8e-124 449.9 363 60.9
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 3.9e-124 448.7 322 66.5
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.7e-124 448.0 351 61.5
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.6e-123 446.0 344 62.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.7e-122 442.2 346 62.1
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.4e-121 439.5 365 60.0
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 5.0e-119 431.8 357 60.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.4e-118 430.3 325 63.1
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.8e-116 423.3 356 58.7
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 2.3e-116 422.9 353 59.5
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 6.7e-116 421.4 315 65.4
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.0e-115 419.9 372 58.3
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 4.4e-115 418.7 309 64.7
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 7.4e-115 417.9 360 57.8
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 6.3e-114 414.8 360 58.6
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 9.1e-113 411.0 363 57.3
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.5e-112 409.1 364 58.0
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.5e-112 409.1 364 58.0
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 2.9e-111 406.0 291 65.6
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.8e-111 405.6 354 56.8
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.0e-108 397.5 295 66.4
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.8e-105 386.7 291 64.9
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.5e-102 376.3 381 52.8
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 5.5e-102 375.2 292 62.7
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.6e-101 373.6 296 59.5
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.2e-99 367.5 357 53.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.0e-97 358.2 279 62.7
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.5e-94 350.5 344 51.7
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 9.5e-94 347.8 342 52.6
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 3.6e-93 345.9 353 48.4
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 4.7e-93 345.5 339 54.9
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 6.1e-93 345.1 363 50.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 5.2e-92 342.0 286 59.1
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.6e-91 339.7 327 49.5
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 2.7e-88 329.7 319 50.8
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.9e-87 326.2 333 48.6
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.9e-86 323.6 363 47.9
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 8.9e-84 314.7 360 48.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.4e-83 312.4 363 47.9
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.4e-81 306.6 255 60.0
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.6e-59 233.4 152 71.1
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 7.1e-57 225.3 324 38.3
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.1e-48 197.2 105 95.2
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.3e-45 188.0 135 63.7
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.7e-40 170.2 138 65.2
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 7.9e-40 168.7 344 32.0
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 7.4e-38 162.2 123 66.7
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.3e-36 156.0 137 56.2
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 9.3e-33 145.2 337 33.2
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-31 140.6 112 61.6
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.6e-27 127.1 80 77.5
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.7e-26 124.4 199 36.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-25 121.3 81 66.7
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-25 121.3 87 62.1
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.2e-25 119.8 340 27.1
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-25 119.8 86 62.8
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.2e-25 119.8 81 65.4
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-20 102.1 78 59.0
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.5e-19 101.3 104 54.8
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-19 100.1 77 58.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-19 100.1 77 58.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.5e-19 99.8 78 57.7
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.9e-19 99.4 77 58.4
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.7e-19 99.0 78 56.4
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.7e-19 99.0 77 58.4
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-18 98.6 77 57.1
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.5e-18 95.5 100 51.0
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-17 95.1 70 58.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-17 95.1 78 52.6
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.4e-15 88.2 85 49.4
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 3.0e-15 87.0 85 49.4
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 2.5e-14 84.0 58 65.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.7e-13 81.3 73 53.4
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 6.3e-13 79.3 44 79.5
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.4e-12 77.4 90 51.1
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.9e-12 75.9 55 63.6
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.0e-11 74.3 50 74.0
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-11 74.3 86 46.5
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 2.5e-09 67.4 67 53.7
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 4.7e-08 63.2 43 67.4
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 4.7e-08 63.2 39 74.4
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-07 61.2 47 63.8
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 5.1e-07 59.7 39 69.2
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 8.8e-07 58.9 38 68.4


User provided reference genes

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