Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 4.1e-221 771.2 410 100.0
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 9.8e-215 750.0 409 97.3
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 4.3e-210 734.6 409 94.6
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.1e-208 728.4 409 94.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 5.2e-208 727.6 409 93.9
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 5.2e-208 727.6 409 94.6
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 8.9e-208 726.9 409 93.6
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.0e-207 725.7 409 93.9
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 2.0e-207 725.7 409 93.6
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 2.6e-207 725.3 409 93.6
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 3.4e-207 724.9 409 93.4
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.7e-206 721.5 409 92.9
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 3.2e-205 718.4 409 92.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.2e-204 716.5 411 92.5
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.6e-204 716.1 409 92.7
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 4.6e-204 714.5 409 92.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 5.6e-202 707.6 435 87.6
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 9.5e-202 706.8 409 91.4
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.4e-189 665.6 406 86.7
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 8.7e-179 630.6 406 81.0
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.5e-178 629.8 406 82.0
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.5e-178 629.8 406 81.0
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 2.5e-178 629.0 406 79.8
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 7.3e-178 627.5 406 80.3
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.4e-176 622.5 406 80.5
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.2e-175 620.2 406 80.0
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 4.4e-175 618.2 409 78.0
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 7.6e-175 617.5 406 78.8
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 7.6e-175 617.5 406 80.3
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 9.9e-175 617.1 410 78.8
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-174 616.7 406 80.3
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 4.9e-174 614.8 409 78.5
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 4.9e-174 614.8 406 79.1
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 4.9e-174 614.8 406 79.8
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 6.4e-174 614.4 405 79.5
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 8.4e-174 614.0 406 78.1
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 8.4e-174 614.0 406 79.6
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 8.4e-174 614.0 406 79.8
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.1e-173 613.6 406 79.8
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.9e-173 612.8 409 78.2
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.9e-173 612.8 406 79.6
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.9e-173 612.8 406 79.1
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 2.4e-173 612.5 409 77.3
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.4e-173 612.5 406 79.1
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.4e-173 612.5 399 80.7
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.2e-173 612.1 409 78.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 5.4e-173 611.3 406 78.1
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 5.4e-173 611.3 405 79.3
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 5.4e-173 611.3 406 78.8
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 7.1e-173 610.9 406 77.8
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 9.3e-173 610.5 409 77.8
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.2e-172 610.1 406 78.3
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.2e-172 610.1 406 79.1
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.2e-172 610.1 409 78.2
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.7e-171 606.3 406 78.3
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.7e-171 606.3 406 78.3
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 2.3e-171 605.9 406 77.3
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 3.0e-171 605.5 409 77.5
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 3.0e-171 605.5 406 78.1
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 3.0e-171 605.5 433 75.8
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 5.1e-171 604.7 406 78.3
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 6.6e-171 604.4 406 78.1
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 6.6e-171 604.4 406 78.3
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.7e-171 604.0 406 77.3
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 8.7e-171 604.0 405 78.3
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.5e-170 603.2 406 78.6
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.5e-170 603.2 406 78.6
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.9e-170 602.8 418 76.1
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 2.5e-170 602.4 417 76.0
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 3.3e-170 602.1 406 78.1
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 4.3e-170 601.7 406 78.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 9.6e-170 600.5 409 77.0
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.1e-169 599.4 406 77.1
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 8.1e-169 597.4 409 76.3
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 8.1e-169 597.4 432 73.1
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.1e-168 597.0 406 76.6
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.4e-168 596.7 406 76.4
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.4e-168 596.7 408 77.0
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.8e-168 596.3 406 77.8
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 4.0e-168 595.1 406 77.3
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 4.0e-168 595.1 408 75.0
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.2e-167 593.6 406 77.3
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.2e-167 593.6 408 75.2
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 4.5e-167 591.7 406 75.9
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 8.4e-166 587.4 408 75.0
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 7.1e-165 584.3 393 78.1
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.6e-164 581.6 409 73.6
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 2.8e-161 572.4 409 73.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.7e-161 572.0 406 75.4
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.0e-159 566.2 387 77.8
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 5.8e-159 564.7 441 69.2
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 4.9e-158 561.6 425 70.4
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.9e-157 559.7 406 72.9
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 7.1e-157 557.8 409 71.6
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.8e-155 553.1 406 71.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 6.7e-155 551.2 419 71.8
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 4.3e-154 548.5 385 72.2
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.2e-151 540.4 406 71.7
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 7.6e-151 537.7 358 79.6
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 5.1e-147 525.0 355 78.0
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.1e-147 525.0 390 73.3
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 5.1e-147 525.0 409 68.5
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.3e-146 522.3 398 71.6
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.4e-144 516.9 406 67.0
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.8e-144 516.5 355 78.0
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 4.1e-128 462.2 360 68.1
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 2.0e-127 459.9 407 60.9
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 3.6e-124 449.1 329 69.9
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 2.6e-119 433.0 412 59.5
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 2.5e-117 426.4 415 57.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 6.1e-116 421.8 281 81.1
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.8e-115 420.2 370 65.9
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.7e-113 412.5 414 59.7
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.1e-104 384.4 261 79.7
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 5.9e-95 352.1 378 56.1
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.7e-87 326.6 219 79.0
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.7e-76 289.3 202 75.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.2e-73 280.4 195 74.9
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.2e-67 259.2 204 68.1
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 3.4e-66 256.5 218 62.4
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.1e-63 247.3 165 80.6
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.0e-62 245.0 176 74.4
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 6.4e-57 225.7 147 74.8
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.5e-55 219.9 182 67.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.4e-51 207.2 447 35.8
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.8e-43 181.0 122 69.7
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.3e-37 159.8 142 63.4
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.6e-36 157.9 137 64.2
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 6.1e-31 139.4 275 38.5
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 1.3e-30 138.3 102 68.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 5.7e-29 132.9 158 55.1
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 3.7e-28 130.2 275 36.7
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.0e-25 122.1 103 65.0
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 3.2e-24 117.1 101 63.4
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.0e-21 107.8 62 82.3
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 4.8e-20 103.2 132 51.5
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 2.1e-15 87.8 84 56.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.7e-15 87.4 72 66.7
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.0e-14 84.0 70 72.9
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 8.8e-14 82.4 70 71.4
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 8.8e-14 82.4 70 71.4
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 8.8e-14 82.4 70 71.4
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 8.8e-14 82.4 70 71.4
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 8.8e-14 82.4 70 71.4
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 8.8e-14 82.4 70 71.4
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 8.8e-14 82.4 70 71.4
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-13 82.0 69 69.6
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-13 82.0 69 72.5
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.5e-13 81.6 66 74.2
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-13 81.6 70 70.0
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 2.0e-13 81.3 64 73.4
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 2.2e-12 77.8 75 58.7
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 6.3e-12 76.3 46 71.7
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 6.3e-12 76.3 46 71.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.4e-11 74.3 72 66.7
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 3.5e-10 70.5 166 35.5
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 5.0e-09 66.6 40 82.5
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 5.0e-09 66.6 177 31.6
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 6.5e-09 66.2 56 69.6
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 3.6e-07 60.5 46 73.9
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.7e-07 60.1 48 68.8
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 8.0e-07 59.3 40 80.0
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 8.0e-07 59.3 83 41.0
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 3.0e-06 57.4 40 72.5
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 8.8e-06 55.8 43 74.4


User provided reference genes

Program Settings