Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 1.2e-93 346.7 195 100.0
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 3.8e-84 315.1 195 92.3
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.6e-74 283.1 195 86.2
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 3.0e-65 252.3 197 79.2
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 9.8e-64 247.3 199 71.4
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 1.4e-62 243.4 198 76.3
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 5.4e-62 241.5 195 76.9
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 6.6e-60 234.6 196 73.0
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 6.6e-60 234.6 196 73.0
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 6.6e-60 234.6 196 73.0
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 1.4e-54 216.9 201 64.2
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 1.4e-54 216.9 196 70.9
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 1.4e-54 216.9 196 70.9
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 8.6e-52 207.6 196 69.4
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 1.9e-51 206.5 196 69.4
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 1.6e-50 203.4 206 67.5
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 2.1e-50 203.0 157 70.7
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 6.2e-50 201.4 196 68.4
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 2.9e-47 192.6 197 69.0
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 6.4e-47 191.4 202 67.3
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 8.3e-47 191.0 197 68.5
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 1.3e-44 183.7 196 65.3
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 1.5e-43 180.3 198 67.2
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 5.6e-43 178.3 206 53.9
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 3.1e-41 172.6 198 65.7
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 8.4e-39 164.5 215 56.3
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.1e-38 164.1 212 52.4
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 1.9e-38 163.3 208 59.1
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 2.7e-37 159.5 208 57.7
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 3.9e-36 155.6 215 55.3
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 5.1e-36 155.2 215 56.7
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 1.1e-35 154.1 210 56.7
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 9.6e-35 151.0 206 56.3
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 3.6e-34 149.1 209 56.5
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 8.1e-34 147.9 217 53.9
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 8.1e-34 147.9 217 53.9
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 2.0e-32 143.3 214 53.7
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 4.4e-32 142.1 116 70.7
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 5.8e-32 141.7 206 55.8
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 3.2e-30 136.0 204 55.9
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 1.0e-28 131.0 205 53.7
CARHR132130 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.0e-28 131.0 85 80.0
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.7e-23 113.6 147 50.3
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 2.4e-22 109.8 204 50.5
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.6e-21 107.1 247 40.9
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 9.6e-19 97.8 205 48.3
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 6.2e-18 95.1 205 47.8
THA.LOC104824529 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.3e-15 87.4 117 43.6
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.9e-12 75.9 101 45.5
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 1.1e-11 74.3 68 55.9
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 1.5e-11 73.9 93 48.4
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 1.5e-11 73.9 152 35.5
BcaC02g07532 Brassica carinata HOM05D008508 ORTHO05D003325 1.9e-11 73.6 75 57.3
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.3e-11 72.8 130 40.8
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 9.6e-11 71.2 68 54.4
BcaB01g00255 Brassica carinata HOM05D008508 ORTHO05D003325 1.3e-10 70.9 88 64.8
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.3e-10 70.9 107 43.9
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 1.3e-10 70.9 133 39.8
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.6e-10 70.5 127 37.8
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.6e-10 70.5 127 38.6
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 4.8e-10 68.9 143 37.1
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 6.2e-10 68.6 132 37.1
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 8.2e-10 68.2 55 60.0
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.8e-09 67.0 150 34.7
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.4e-09 66.6 96 41.7
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 4.0e-09 65.9 160 31.9
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 5.3e-09 65.5 148 34.5
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 5.3e-09 65.5 101 42.6
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 9.0e-09 64.7 118 39.8
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 1.2e-08 64.3 51 60.8
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.2e-08 64.3 50 62.0
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.0e-08 63.5 50 58.0
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 2.0e-08 63.5 67 50.7
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 2.0e-08 63.5 130 35.4
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 2.6e-08 63.2 101 40.6
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 3.4e-08 62.8 57 54.4
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.4e-08 62.8 56 55.4
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 4.5e-08 62.4 101 43.6
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.8e-08 62.0 69 49.3
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 5.8e-08 62.0 49 61.2
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 5.8e-08 62.0 81 44.4
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 7.6e-08 61.6 101 37.6
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.0e-07 61.2 66 53.0
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.0e-07 61.2 117 37.6
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.3e-07 60.8 110 40.0
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 1.3e-07 60.8 101 37.6
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.7e-07 60.5 68 50.0
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 2.2e-07 60.1 167 31.1
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.2e-07 60.1 67 53.7
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 2.2e-07 60.1 115 35.7
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.9e-07 59.7 66 43.9
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 2.9e-07 59.7 65 43.1
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 3.8e-07 59.3 81 38.3
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 3.8e-07 59.3 99 37.4
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 4.9e-07 58.9 59 50.8
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 6.5e-07 58.5 105 35.2
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 6.5e-07 58.5 66 42.4
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 6.5e-07 58.5 85 43.5
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 6.5e-07 58.5 119 37.8
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 8.4e-07 58.2 81 45.7
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.1e-06 57.8 66 42.4
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 1.1e-06 57.8 50 58.0
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 1.9e-06 57.0 79 46.8
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 1.9e-06 57.0 53 47.2
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.9e-06 57.0 86 43.0
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 2.5e-06 56.6 72 38.9
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 3.2e-06 56.2 91 41.8
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 4.2e-06 55.8 81 39.5
AL5G37360 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 5.5e-06 55.5 73 54.8
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 5.5e-06 55.5 96 42.7
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 5.5e-06 55.5 90 37.8
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 5.5e-06 55.5 121 35.5
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 5.5e-06 55.5 81 40.7
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 5.5e-06 55.5 102 32.4
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 5.5e-06 55.5 155 40.6
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 7.1e-06 55.1 139 33.1
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 7.1e-06 55.1 49 53.1
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 7.1e-06 55.1 49 53.1
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 7.1e-06 55.1 98 36.7
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 7.1e-06 55.1 96 37.5
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 9.3e-06 54.7 85 38.8
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 9.3e-06 54.7 148 31.1
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 9.3e-06 54.7 50 52.0
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 9.3e-06 54.7 88 33.0
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 9.3e-06 54.7 88 33.0


User provided reference genes

Program Settings