Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.3e-99 366.3 172 100.0
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 3.6e-54 215.3 174 60.9
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 6.2e-54 214.5 170 64.7
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 3.8e-51 205.3 177 61.0
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 1.3e-43 180.3 174 52.9
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 6.4e-43 177.9 172 51.7
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 8.4e-43 177.6 174 48.9
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 1.9e-39 166.4 159 53.5
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.0e-35 154.1 146 54.8
A09p15620 Brassica napus HOM05D007210 ORTHO05D006152 7.9e-33 144.4 172 48.3
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.9e-32 142.1 146 53.4
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 5.1e-32 141.7 172 46.5
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.7e-30 135.6 158 46.2
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.7e-30 135.6 158 45.6
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 8.2e-30 134.4 152 45.4
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.4e-29 133.7 177 41.8
BcaC04g22476 Brassica carinata HOM05D007210 ORTHO05D006152 2.4e-29 132.9 155 48.4
BolC9t54788H Brassica oleracea HOM05D007210 ORTHO05D006152 2.4e-29 132.9 155 48.4
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 4.1e-29 132.1 163 47.2
BraA09t37202Z Brassica rapa HOM05D007210 ORTHO05D006152 5.3e-29 131.7 160 47.5
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 2.0e-28 129.8 164 47.0
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 4.5e-28 128.6 164 46.3
Thhalv10024042m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 5.9e-28 128.3 187 42.2
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.3e-27 127.1 176 44.3
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 1.3e-27 127.1 176 39.2
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 1.4e-26 123.6 164 43.9
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.6e-25 120.2 169 42.0
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 2.1e-25 119.8 169 40.8
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 2.1e-25 119.8 168 42.3
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 3.6e-25 119.0 170 43.5
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 6.1e-25 118.2 166 40.4
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.9e-25 117.9 180 39.4
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 1.8e-24 116.7 170 43.5
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.0e-24 115.9 180 39.4
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 3.9e-24 115.5 170 40.6
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 5.1e-24 115.2 168 38.1
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 6.7e-24 114.8 170 42.9
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 6.7e-24 114.8 170 42.9
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 8.7e-24 114.4 170 43.5
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.9e-23 113.2 163 43.6
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.5e-23 112.8 94 55.3
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 7.4e-23 111.3 170 39.4
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 1.7e-22 110.2 142 45.1
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.8e-22 109.4 174 40.8
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.7e-22 109.0 167 38.9
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 4.8e-22 108.6 171 39.2
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 8.2e-22 107.8 177 36.7
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.1e-21 105.5 103 51.5
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 2.6e-20 102.8 159 39.6
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 5.9e-20 101.7 182 34.1
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 5.9e-20 101.7 156 39.7
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 7.7e-20 101.3 140 36.4
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-19 100.1 156 39.7
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.9e-19 99.4 107 44.9
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 2.9e-19 99.4 201 36.8
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 2.9e-19 99.4 142 40.8
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 3.8e-19 99.0 142 40.8
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 3.8e-19 99.0 142 40.8
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 5.0e-19 98.6 142 41.5
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 6.5e-19 98.2 140 38.6
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 6.5e-19 98.2 168 38.1
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 8.5e-19 97.8 142 41.5
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 8.5e-19 97.8 142 41.5
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 4.2e-18 95.5 140 40.0
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 4.2e-18 95.5 143 37.1
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 1.2e-17 94.0 171 36.8
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.6e-17 93.6 139 35.3
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 1.6e-17 93.6 114 41.2
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 2.7e-17 92.8 126 40.5
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 3.6e-17 92.4 170 35.3
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 3.6e-17 92.4 170 35.3
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 3.6e-17 92.4 142 39.4
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 3.6e-17 92.4 136 39.0
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 1.4e-16 90.5 126 39.7
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 1.8e-16 90.1 99 47.5
BcaC03g13143 Brassica carinata HOM05D008885 ORTHO05D006152 3.0e-16 89.4 137 34.3
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 3.0e-16 89.4 118 44.1
C02p02150 Brassica napus HOM05D008885 ORTHO05D006152 3.0e-16 89.4 137 34.3
BolC2t06184H Brassica oleracea HOM05D008885 ORTHO05D006152 3.0e-16 89.4 137 34.3
Thhalv10015607m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 3.0e-16 89.4 152 34.9
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 3.0e-16 89.4 125 35.2
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 5.1e-16 88.6 126 37.3
BcaC03g13144 Brassica carinata HOM05D008885 ORTHO05D006152 1.5e-15 87.0 134 35.1
C02p02160 Brassica napus HOM05D008885 ORTHO05D006152 1.5e-15 87.0 134 35.1
BolC3t13972H Brassica oleracea HOM05D007210 ORTHO05D006152 1.5e-15 87.0 112 40.2
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 2.0e-15 86.7 129 36.4
BcaB05g21588 Brassica carinata HOM05D008885 ORTHO05D006152 2.6e-15 86.3 137 35.8
BraA02t04833Z Brassica rapa HOM05D008885 ORTHO05D006152 2.6e-15 86.3 137 34.3
BcaB05g21732 Brassica carinata HOM05D008885 ORTHO05D006152 5.7e-15 85.1 137 34.3
BcaB05g21733 Brassica carinata HOM05D008885 ORTHO05D006152 5.7e-15 85.1 137 34.3
BolC2t06185H Brassica oleracea HOM05D008885 ORTHO05D006152 7.4e-15 84.7 134 34.3
BolC5t30124H Brassica oleracea HOM05D007210 ORTHO05D006152 7.4e-15 84.7 161 31.1
C05p13910 Brassica napus HOM05D007210 ORTHO05D006152 9.7e-15 84.3 161 31.1
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.3e-14 84.0 165 30.9
BcaB07g31391 Brassica carinata HOM05D007210 ORTHO05D006152 1.3e-14 84.0 109 43.1
Thhalv10023805m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.7e-14 83.6 119 40.3
BcaC03g13142 Brassica carinata HOM05D008885 ORTHO05D006152 2.2e-14 83.2 127 34.6
BolC2t06182H Brassica oleracea HOM05D008885 ORTHO05D006152 2.2e-14 83.2 127 34.6
BraA02t04831Z Brassica rapa HOM05D008885 ORTHO05D006152 4.8e-14 82.0 127 33.9
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 8.2e-14 81.3 165 29.1
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 8.2e-14 81.3 127 35.4
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 8.2e-14 81.3 138 33.3
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 1.1e-13 80.9 111 36.9
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 1.8e-13 80.1 111 38.7
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 1.8e-13 80.1 111 38.7
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 5.3e-13 78.6 111 36.0
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 5.3e-13 78.6 151 32.5
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 6.9e-13 78.2 125 35.2
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 1.5e-12 77.0 111 36.0
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 2.0e-12 76.6 94 39.4
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.6e-12 76.3 169 31.4
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 2.6e-12 76.3 115 40.0
C09p18860 Brassica napus HOM05D007210 ORTHO05D006152 1.0e-11 74.3 155 36.8
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.3e-11 73.9 152 28.9
Carub.0006s0396 Capsella rubella HOM05D008885 ORTHO05D006152 1.7e-11 73.6 112 33.9
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-10 70.9 99 37.4
BcaC04g20042 Brassica carinata HOM05D007210 ORTHO05D019922 1.4e-10 70.5 94 36.2
BolC9t57696H Brassica oleracea HOM05D007210 ORTHO05D006152 1.4e-10 70.5 94 36.2
CARHR208210 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.9e-10 70.1 136 30.9
C04p12630 Brassica napus HOM05D007210 ORTHO05D006152 2.5e-10 69.7 156 34.0
BolC4t22912H Brassica oleracea HOM05D007210 ORTHO05D006152 2.5e-10 69.7 156 34.0
AT1G50690 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 3.2e-10 69.3 147 30.6
AL1G58370 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 4.2e-10 68.9 114 36.0
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.5e-10 68.6 156 30.8
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 9.4e-10 67.8 117 35.0
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 2.1e-09 66.6 117 35.0
Rhsim12G0199400 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.4e-08 63.9 140 30.0
BcaB05g21589 Brassica carinata HOM05D008885 ORTHO05D006152 1.8e-08 63.5 179 28.5
BcaB08g36040 Brassica carinata HOM05D007210 ORTHO05D006152 3.9e-08 62.4 111 34.2
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 8.8e-08 61.2 159 29.6
Carub.0002s0164 Capsella rubella HOM05D007210 ORTHO05D006152 1.5e-07 60.5 88 42.0
Lj1A773T41 Lonicera japonica HOM05D011954 ORTHO05D014236 2.6e-07 59.7 127 33.9
Lj1A778T39 Lonicera japonica HOM05D011954 ORTHO05D014236 2.6e-07 59.7 127 33.9
BcaC02g11660 Brassica carinata HOM05D007210 ORTHO05D006152 4.4e-07 58.9 156 32.1
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 4.4e-07 58.9 142 32.4
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 4.4e-07 58.9 133 33.1
AL8G32770 Arabidopsis lyrata HOM05D008242 ORTHO05D010974 7.4e-07 58.2 109 28.4
AL7G39700 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 9.7e-07 57.8 140 26.4
Thhalv10015718m.g Eutrema salsugineum HOM05D008242 ORTHO05D010974 9.7e-07 57.8 125 30.4
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 3.7e-06 55.8 109 32.1
AL52U10010 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.8e-06 55.5 91 33.0
Dinv41569 Davidia involucrata HOM05D008623 ORTHO05D007789 4.8e-06 55.5 132 32.6
AL8G32860 Arabidopsis lyrata HOM05D008242 ORTHO05D010974 6.3e-06 55.1 126 31.0
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 6.3e-06 55.1 125 33.6


User provided reference genes

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