Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37120 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 7.9e-25 116.7 77 100.0
AL4G33470 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 2.4e-21 105.1 77 90.9
Carub.0004s1901 Capsella rubella HOM05D003656 ORTHO05D004211 9.0e-21 103.2 77 90.9
Aa31LG5G22410 Aethionema arabicum HOM05D003656 ORTHO05D004211 1.2e-20 102.8 78 78.2
CARHR131630 Cardamine hirsuta HOM05D003656 ORTHO05D004211 2.0e-20 102.1 77 70.1
Sp4g19440 Schrenkiella parvula HOM05D003656 ORTHO05D004211 2.6e-20 101.7 74 78.4
A07p21590 Brassica napus HOM05D003656 ORTHO05D004211 1.0e-19 99.8 77 67.5
BolC6t37304H Brassica oleracea HOM05D003656 ORTHO05D004211 1.0e-19 99.8 77 67.5
Thhalv10017496m.g Eutrema salsugineum HOM05D003656 ORTHO05D004211 1.3e-19 99.4 77 88.3
AL5G34280 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 8.5e-19 96.7 77 66.2
AT3G53370 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 2.5e-18 95.1 77 64.9
BcaB01g00283 Brassica carinata HOM05D003656 ORTHO05D004211 1.2e-17 92.8 77 66.2
Carub.0005s1992 Capsella rubella HOM05D003656 ORTHO05D004211 1.6e-17 92.4 77 63.6
C06p21180 Brassica napus HOM05D003656 ORTHO05D004211 3.6e-17 91.3 71 67.6
BraA07t29841Z Brassica rapa HOM05D003656 ORTHO05D004211 3.6e-17 91.3 71 67.6
THA.LOC104806498 Tarenaya hassleriana HOM05D003656 ORTHO05D004211 3.6e-17 91.3 77 75.3
THA.LOC104823451 Tarenaya hassleriana HOM05D003656 ORTHO05D004211 4.6e-17 90.9 77 75.3
Thhalv10010878m.g Eutrema salsugineum HOM05D003656 ORTHO05D004211 1.8e-16 89.0 77 62.3
Lsat_1_v5_gn_6_30301 Lactuca sativa HOM05D003656 ORTHO05D004211 2.3e-16 88.6 69 65.2
Thhalv10021874m.g Eutrema salsugineum HOM05D003656 ORTHO05D004211 3.0e-16 88.2 66 75.8
Sp5g08980 Schrenkiella parvula HOM05D003656 ORTHO05D004211 3.9e-16 87.8 77 62.3
Aa31LG3G2170 Aethionema arabicum HOM05D003656 ORTHO05D004211 6.7e-16 87.0 75 73.3
C08p28710 Brassica napus HOM05D003656 ORTHO05D004211 6.7e-16 87.0 77 72.7
BolC8t50475H Brassica oleracea HOM05D003656 ORTHO05D004211 6.7e-16 87.0 77 74.0
THA.LOC104805286 Tarenaya hassleriana HOM05D003656 ORTHO05D004211 6.7e-16 87.0 77 77.9
Aa31LG10G8550 Aethionema arabicum HOM05D003656 ORTHO05D004211 1.1e-15 86.3 77 75.3
A09p46380 Brassica napus HOM05D003656 ORTHO05D004211 1.1e-15 86.3 77 71.4
BraA09t40103Z Brassica rapa HOM05D003656 ORTHO05D004211 1.1e-15 86.3 77 71.4
A05p39380 Brassica napus HOM05D003656 ORTHO05D004211 1.5e-15 85.9 75 69.3
C05p58400 Brassica napus HOM05D003656 ORTHO05D004211 1.5e-15 85.9 75 61.3
BolC5t34493H Brassica oleracea HOM05D003656 ORTHO05D004211 1.5e-15 85.9 75 69.3
BraA05t22719Z Brassica rapa HOM05D003656 ORTHO05D004211 1.5e-15 85.9 75 69.3
Sp3g08080 Schrenkiella parvula HOM05D003656 ORTHO05D004211 1.5e-15 85.9 75 69.3
CARHR163250 Cardamine hirsuta HOM05D003656 ORTHO05D004211 1.9e-15 85.5 77 62.3
AL3G20960 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 2.5e-15 85.1 66 80.3
Carub.0003s0883 Capsella rubella HOM05D003656 ORTHO05D004211 2.5e-15 85.1 66 74.2
ECA233G0967 Erigeron canadensis HOM05D003656 ORTHO05D004211 3.3e-15 84.7 75 61.3
A01p42160 Brassica napus HOM05D003656 ORTHO05D004211 4.3e-15 84.3 75 77.3
AT3G09735 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 5.7e-15 84.0 66 78.8
BraA03t12757Z Brassica rapa HOM05D003656 ORTHO05D004211 5.7e-15 84.0 75 68.0
HanXRQChr02g0052001 Helianthus annuus HOM05D003656 ORTHO05D004211 5.7e-15 84.0 66 65.2
BolC1t05435H Brassica oleracea HOM05D003656 ORTHO05D004211 7.4e-15 83.6 66 83.3
BraA01t04284Z Brassica rapa HOM05D003656 ORTHO05D004211 7.4e-15 83.6 66 83.3
A03p35840 Brassica napus HOM05D003656 ORTHO05D004211 9.7e-15 83.2 66 72.7
C03p43490 Brassica napus HOM05D003656 ORTHO05D004211 9.7e-15 83.2 75 74.7
A04p06180 Brassica napus HOM05D000026 ORTHO05D001292 1.3e-14 82.8 77 58.4
BraA04t16321Z Brassica rapa HOM05D000026 ORTHO05D001292 1.3e-14 82.8 77 58.4
BcaC01g04245 Brassica carinata HOM05D000958 ORTHO05D000786 1.6e-14 82.4 66 80.3
C04p39250 Brassica napus HOM05D003656 ORTHO05D004211 1.6e-14 82.4 77 58.4
BolC4t25493H Brassica oleracea HOM05D000026 ORTHO05D001292 1.6e-14 82.4 77 58.4
AUR62025008 Chenopodium quinoa HOM05D003656 ORTHO05D004211 1.6e-14 82.4 66 65.2
HanXRQChr13g0399601 Helianthus annuus HOM05D003656 ORTHO05D004211 1.6e-14 82.4 66 63.6
QL04p031290 Quercus lobata HOM05D003656 ORTHO05D004211 1.6e-14 82.4 64 62.5
QL07p045029 Quercus lobata HOM05D003656 ORTHO05D004211 1.6e-14 82.4 64 62.5
Gohir.A01G216200 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.7e-14 81.3 65 63.1
Gohir.D01G205000 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.7e-14 81.3 65 63.1
Gorai.002G249300 Gossypium raimondii HOM05D003656 ORTHO05D004211 3.7e-14 81.3 65 63.1
Ah.01g015060 Amaranthus hybridus HOM05D003656 ORTHO05D004211 4.8e-14 80.9 65 64.6
CSS0018024 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 4.8e-14 80.9 65 63.1
Potri.006G130200 Populus trichocarpa HOM05D003656 ORTHO05D004211 4.8e-14 80.9 65 66.2
TAR369G0518 Trochodendron aralioides HOM05D003656 ORTHO05D004211 4.8e-14 80.9 65 64.6
EL10Ac9g22481 Beta vulgaris HOM05D003656 ORTHO05D004211 6.3e-14 80.5 65 72.3
Gohir.D04G114700 Gossypium hirsutum HOM05D003656 ORTHO05D004211 6.3e-14 80.5 65 63.1
Gorai.009G419300 Gossypium raimondii HOM05D003656 ORTHO05D004211 6.3e-14 80.5 65 63.1
Manes.08G004601 Manihot esculenta HOM05D003656 ORTHO05D004211 6.3e-14 80.5 66 60.6
Sc06g0010000 Simmondsia chinensis HOM05D003656 ORTHO05D004211 6.3e-14 80.5 65 73.8
CAN.G1091.10 Capsicum annuum HOM05D003656 ORTHO05D004211 8.2e-14 80.1 66 72.7
Migut.L01670 Erythranthe guttata HOM05D003656 ORTHO05D004211 8.2e-14 80.1 66 63.6
MBI02_g25821_MAGBIO Magnolia biondii HOM05D003656 ORTHO05D004211 8.2e-14 80.1 70 58.6
CARHR084160 Cardamine hirsuta HOM05D003656 ORTHO05D004211 1.1e-13 79.7 66 62.1
PGSC0003DMG400001772 Solanum tuberosum HOM05D003656 ORTHO05D004211 1.1e-13 79.7 66 66.7
Sed0001939 Sechium edule HOM05D003656 ORTHO05D004211 1.4e-13 79.3 79 53.2
Solyc09g007500.3 Solanum lycopersicum HOM05D003656 ORTHO05D004211 1.4e-13 79.3 66 63.6
Sopen09g002370 Solanum pennellii HOM05D003656 ORTHO05D004211 1.4e-13 79.3 66 63.6
MELO3C009327.2 Cucumis melo HOM05D003656 ORTHO05D004211 1.8e-13 79.0 66 59.1
Gohir.A04G075600 Gossypium hirsutum HOM05D003656 ORTHO05D004211 1.8e-13 79.0 65 61.5
TAR623G1327 Trochodendron aralioides HOM05D003656 ORTHO05D004211 1.8e-13 79.0 65 63.1
BcaC02g09170 Brassica carinata HOM05D000026 ORTHO05D001292 2.4e-13 78.6 68 61.8
Hma1.2p1_0614F.1_g189580 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 3.1e-13 78.2 65 56.9
CSS0043834 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 4.1e-13 77.8 65 60.0
Nitab4.5_0000754g0160 Nicotiana tabacum HOM05D003656 ORTHO05D004211 4.1e-13 77.8 66 60.6
Nitab4.5_0003973g0060 Nicotiana tabacum HOM05D003656 ORTHO05D004211 4.1e-13 77.8 66 60.6
Oeu014968.1 Olea europaea HOM05D003656 ORTHO05D000397 4.1e-13 77.8 66 60.6
CAN.G933.3 Capsicum annuum HOM05D003656 ORTHO05D004211 5.3e-13 77.4 66 60.6
Ciclev10013218m.g Citrus clementina HOM05D003656 ORTHO05D004211 5.3e-13 77.4 64 64.1
Glyma.03G179000 Glycine max HOM05D003656 ORTHO05D004211 5.3e-13 77.4 64 62.5
Sopen10g035430 Solanum pennellii HOM05D003656 ORTHO05D004211 5.3e-13 77.4 66 60.6
TPR.G18268 Trifolium pratense HOM05D003656 ORTHO05D004211 5.3e-13 77.4 77 53.2
Actinidia05263 Actinidia chinensis HOM05D000190 ORTHO05D000113 6.9e-13 77.0 65 56.9
Actinidia13096 Actinidia chinensis HOM05D003656 ORTHO05D004211 6.9e-13 77.0 65 56.9
CiPaw.10G136100 Carya illinoinensis HOM05D003656 ORTHO05D004211 6.9e-13 77.0 65 61.5
CsaV3_3G035680 Cucumis sativus L. HOM05D000026 ORTHO05D001292 6.9e-13 77.0 79 50.6
ClCG10G020440 Citrullus lanatus HOM05D003656 ORTHO05D004211 9.1e-13 76.6 75 53.3
Migut.J00425 Erythranthe guttata HOM05D003656 ORTHO05D004211 9.1e-13 76.6 66 78.8
Nitab4.5_0006156g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 9.1e-13 76.6 66 59.1
SalBow3G0799 Salvia bowleyana HOM05D003656 ORTHO05D004211 9.1e-13 76.6 67 62.7
CsaV3_6G039400 Cucumis sativus L. HOM05D003656 ORTHO05D004211 1.2e-12 76.3 65 58.5
Duzib093G1390 Durio zibethinus HOM05D003656 ORTHO05D004211 1.2e-12 76.3 65 60.0
PGSC0003DMG401017590 Solanum tuberosum HOM05D003656 ORTHO05D004211 1.2e-12 76.3 66 59.1
MSTRG.5727 Avicennia marina HOM05D003656 ORTHO05D004211 1.5e-12 75.9 66 57.6
Cc06_g03710 Coffea canephora HOM05D003656 ORTHO05D004211 1.5e-12 75.9 65 56.9
Gohir.A09G151300 Gossypium hirsutum HOM05D003656 ORTHO05D004211 1.5e-12 75.9 65 60.0
Gohir.D09G146900 Gossypium hirsutum HOM05D003656 ORTHO05D004211 1.5e-12 75.9 65 61.5
Gorai.006G168100 Gossypium raimondii HOM05D003656 ORTHO05D004211 1.5e-12 75.9 65 61.5
Nitab4.5_0003871g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.5e-12 75.9 66 56.1
CiPaw.09G178500 Carya illinoinensis HOM05D003656 ORTHO05D004211 2.0e-12 75.5 65 60.0
ClCG04G008890 Citrullus lanatus HOM05D003656 ORTHO05D004211 2.0e-12 75.5 65 55.4
DCAR_017715 Daucus carota HOM05D003656 ORTHO05D004211 2.0e-12 75.5 65 78.5
Hma1.2p1_0111F.1_g054020 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 2.0e-12 75.5 65 56.9
Manes.09G076337 Manihot esculenta HOM05D003656 ORTHO05D004211 2.0e-12 75.5 66 56.1
Glyma.19G179700 Glycine max HOM05D003656 ORTHO05D004211 2.6e-12 75.1 64 75.0
Nn2g10711 Nelumbo nucifera HOM05D003656 ORTHO05D004211 2.6e-12 75.1 65 60.0
Peaxi162Scf00488g00093 Petunia axillaris HOM05D003656 ORTHO05D004211 2.6e-12 75.1 66 57.6
Thecc.05G056100 Theobroma cacao HOM05D003656 ORTHO05D004211 2.6e-12 75.1 65 58.5
BcaC05g29696 Brassica carinata HOM05D003656 ORTHO05D004211 3.4e-12 74.7 60 61.7
Lj1g0024655 Lotus japonicus HOM05D003656 ORTHO05D004211 3.4e-12 74.7 64 59.4
Medtr7g100905 Medicago truncatula HOM05D003656 ORTHO05D004211 3.4e-12 74.7 64 60.9
Nitab4.5_0008568g0020 Nicotiana tabacum HOM05D003656 ORTHO05D004211 3.4e-12 74.7 66 54.5
Phvul.001G175700 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 3.4e-12 74.7 67 64.2
Duzib128G1560 Durio zibethinus HOM05D003656 ORTHO05D004211 4.5e-12 74.3 65 60.0
Medtr7g100880 Medicago truncatula HOM05D003656 ORTHO05D004211 4.5e-12 74.3 64 59.4
TPR.G18279 Trifolium pratense HOM05D003656 ORTHO05D004211 4.5e-12 74.3 64 57.8
Aqoxy4G03232 Aquilegia oxysepala HOM05D003656 ORTHO05D004211 5.9e-12 73.9 75 62.7
CDE04G2181 Ceratophyllum demersum HOM05D003656 ORTHO05D004211 5.9e-12 73.9 65 56.9
Dinv37267 Davidia involucrata HOM05D003656 ORTHO05D004211 5.9e-12 73.9 65 56.9
TAR633G2048 Trochodendron aralioides HOM05D003656 ORTHO05D004211 5.9e-12 73.9 65 60.0
CDE07G1192 Ceratophyllum demersum HOM05D003656 ORTHO05D004211 7.7e-12 73.6 65 66.2
Nn2g13031 Nelumbo nucifera HOM05D003656 ORTHO05D004211 7.7e-12 73.6 65 63.1
Lalb_Chr02g0156271 Lupinus albus HOM05D003656 ORTHO05D004211 1.0e-11 73.2 65 58.5
PSO384G0375 Papaver somniferum HOM05D003656 ORTHO05D004211 1.0e-11 73.2 69 53.6
vmacro08724 Vaccinium macrocarpon HOM05D003656 ORTHO05D004211 1.0e-11 73.2 67 56.7
Lj5g0004266 Lotus japonicus HOM05D003656 ORTHO05D004211 1.3e-11 72.8 77 49.4
Lalb_Chr25g0289191 Lupinus albus HOM05D003656 ORTHO05D004211 1.3e-11 72.8 66 56.1
TWI53G0682 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 1.7e-11 72.4 77 49.4
Cfa017524 Carpinus fangiana HOM05D003656 ORTHO05D004211 2.2e-11 72.0 64 59.4
Haze_20625 Corylus avellana HOM05D003656 ORTHO05D004211 2.2e-11 72.0 64 59.4
Haze_20628 Corylus avellana HOM05D003656 ORTHO05D004211 2.2e-11 72.0 64 59.4
Glyma.13G138200 Glycine max HOM05D003656 ORTHO05D004211 2.2e-11 72.0 66 56.1
GSVIVG01025155001 Vitis vinifera HOM05D003656 ORTHO05D004211 2.2e-11 72.0 65 70.8
Medtr7g100890 Medicago truncatula HOM05D001219 ORTHO05D001017 2.9e-11 71.6 64 59.4
Eucgr.A01168 Eucalyptus grandis HOM05D003656 ORTHO05D004211 3.8e-11 71.2 70 54.3
Atru.chr8.1893 Acer truncatum HOM05D003656 ORTHO05D004211 5.0e-11 70.9 72 75.0
DCAR_014972 Daucus carota HOM05D003656 ORTHO05D004211 5.0e-11 70.9 65 78.5
Psat0s1011g0080 Pisum sativum HOM05D003656 ORTHO05D004211 5.0e-11 70.9 73 56.2
Dinv32777 Davidia involucrata HOM05D003656 ORTHO05D004211 6.5e-11 70.5 65 53.8
MD04G1102100 Malus domestica HOM05D003656 ORTHO05D004211 6.5e-11 70.5 65 61.5
Oeu060097.1 Olea europaea HOM05D003656 ORTHO05D004211 6.5e-11 70.5 66 54.5
Prupe.6G239600 Prunus persica HOM05D003656 ORTHO05D004211 6.5e-11 70.5 67 59.7
RcHm_v2.0_Chr3g0469111 Rosa chinensis HOM05D003656 ORTHO05D004211 6.5e-11 70.5 63 73.0
Hund20195 Selenicereus undatus HOM05D003656 ORTHO05D004211 6.5e-11 70.5 65 52.3
ATR0716G020 Amborella trichopoda HOM05D003656 ORTHO05D004211 8.5e-11 70.1 65 52.3
Phvul.007G107500 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 8.5e-11 70.1 64 53.1
PGSC0003DMG400020934 Solanum tuberosum HOM05D003656 ORTHO05D004211 8.5e-11 70.1 43 76.7
HPP92_015412 Vanilla planifolia HOM05D003656 ORTHO05D004211 8.5e-11 70.1 77 49.4
MD12G1121800 Malus domestica HOM05D003656 ORTHO05D004211 1.1e-10 69.7 65 56.9
Peaxi162Scf00005g00388 Petunia axillaris HOM05D003656 ORTHO05D004211 1.1e-10 69.7 66 53.0
Sed0008432 Sechium edule HOM05D003656 ORTHO05D004211 1.1e-10 69.7 62 54.8
SEGI_21131 Sequoiadendron giganteum HOM05D003656 ORTHO05D004211 1.1e-10 69.7 63 57.1
arahy.Tifrunner.gnm1.ann1.5V2EV5 Arachis hypogaea HOM05D003656 ORTHO05D004211 1.4e-10 69.3 64 54.7
arahy.Tifrunner.gnm1.ann1.FC0UQU Arachis hypogaea HOM05D003656 ORTHO05D004211 1.4e-10 69.3 64 54.7
Lalb_Chr01g0018961 Lupinus albus HOM05D003656 ORTHO05D004211 1.4e-10 69.3 63 66.7
Nitab4.5_0000669g0100 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.4e-10 69.3 43 74.4
Psat3g043880 Pisum sativum HOM05D003656 ORTHO05D004211 1.4e-10 69.3 72 52.8
FvH4_6g15550 Fragaria vesca HOM05D003656 ORTHO05D004211 1.9e-10 68.9 66 68.2
FAN02G2121 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.9e-10 68.9 66 68.2
FAN05G2348 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.9e-10 68.9 66 68.2
FAN09G1094 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.9e-10 68.9 66 68.2
FAN14G0104 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.9e-10 68.9 66 68.2
Os04g0408900 Oryza sativa ssp. japonica HOM05D003656 ORTHO05D004211 2.5e-10 68.6 63 55.6
BcaB02g07791 Brassica carinata HOM05D003656 ORTHO05D004211 3.2e-10 68.2 77 57.1
Duzib106G1222 Durio zibethinus HOM05D003656 ORTHO05D004211 3.2e-10 68.2 65 56.9
SalBow5G0952 Salvia bowleyana HOM05D003656 ORTHO05D004211 4.2e-10 67.8 64 71.9
SalBow5G4464 Salvia bowleyana HOM05D003656 ORTHO05D004211 4.2e-10 67.8 64 71.9
Zm00001eb084180 Zea mays HOM05D003656 ORTHO05D004211 4.2e-10 67.8 74 60.8
TWI74G0472 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 5.5e-10 67.4 69 50.7
Glyma.10G050700 Glycine max HOM05D003656 ORTHO05D004211 7.2e-10 67.0 64 73.4
Os04g0408700 Oryza sativa ssp. japonica HOM05D003656 ORTHO05D004211 7.2e-10 67.0 74 48.6
GSVIVG01025648001 Vitis vinifera HOM05D003656 ORTHO05D004211 9.4e-10 66.6 65 52.3
SHI12537 Sapria himalayana HOM05D003656 ORTHO05D004211 2.7e-09 65.1 74 44.6
HPP92_018116 Vanilla planifolia HOM05D003656 ORTHO05D004211 2.7e-09 65.1 77 48.1
Potri.016G087400 Populus trichocarpa HOM05D003656 ORTHO05D004211 4.6e-09 64.3 65 72.3
unitig_26.g9219 Utricularia gibba HOM05D003656 ORTHO05D004211 6.1e-09 63.9 66 53.0
Cpa.g.sc638.2 Carica papaya HOM05D003656 ORTHO05D004211 7.9e-09 63.5 65 72.3
Pp3c14_22690 Physcomitrium patens HOM05D003656 ORTHO05D004211 3.0e-08 61.6 80 46.2
Peaxi162Scf00472g00033 Petunia axillaris HOM05D003656 ORTHO05D004211 1.1e-07 59.7 65 70.8
Lalb_Chr20g0112831 Lupinus albus HOM05D003656 ORTHO05D004211 2.2e-06 55.5 64 68.8
Lalb_Chr21g0314731 Lupinus albus HOM05D003656 ORTHO05D004211 3.7e-06 54.7 72 63.9


User provided reference genes

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