Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.8e-155 552.0 298 100.0
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.5e-127 459.9 311 83.9
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.7e-113 412.5 307 77.2
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 4.5e-100 368.6 307 75.9
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.7e-94 349.0 314 68.5
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 5.8e-92 341.7 335 66.0
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.3e-86 323.9 319 64.6
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.3e-83 313.9 313 63.3
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 5.0e-83 312.0 313 63.6
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.9e-82 310.1 314 63.7
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.9e-82 310.1 314 63.7
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 2.3e-80 303.1 313 62.9
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.8e-72 276.9 326 55.8
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 5.7e-63 245.4 312 55.1
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.9e-43 179.9 317 42.0
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 8.8e-40 168.3 320 42.8
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.8e-37 160.6 323 40.6
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.3e-35 154.5 323 40.6
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.5e-34 150.2 310 38.7
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 3.3e-34 149.8 345 39.7
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 4.3e-34 149.4 316 39.2
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.6e-33 147.5 304 39.8
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.6e-33 147.5 335 40.0
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.6e-33 147.5 323 37.8
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 3.6e-33 146.4 328 39.9
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.6e-33 146.4 310 39.0
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.3e-32 143.7 342 34.5
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 3.0e-32 143.3 322 36.3
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 5.2e-32 142.5 323 36.2
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 6.8e-32 142.1 321 39.6
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.0e-31 140.6 307 38.1
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 2.0e-31 140.6 330 38.5
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 9.8e-31 138.3 266 42.5
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.9e-30 136.7 324 37.7
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 2.9e-30 136.7 324 35.5
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.9e-30 136.0 318 39.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 6.4e-30 135.6 316 38.3
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 6.4e-30 135.6 335 36.7
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.4e-29 134.4 320 35.6
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.1e-29 132.9 295 42.0
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 4.1e-29 132.9 326 36.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.0e-29 132.1 328 37.5
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 7.0e-29 132.1 330 35.8
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.2e-28 131.3 328 36.6
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-27 127.9 326 37.7
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 3.0e-27 126.7 326 37.4
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.0e-27 126.7 325 38.2
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.0e-27 125.9 326 37.4
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 8.6e-27 125.2 316 37.3
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.5e-26 124.4 328 35.4
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.3e-26 123.2 310 36.1
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-26 123.2 202 41.6
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-26 123.2 202 41.6
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.3e-26 122.9 296 42.9
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.3e-26 122.9 335 33.1
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 5.6e-26 122.5 315 35.9
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 9.5e-26 121.7 304 37.5
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.6e-25 120.9 294 34.7
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-25 120.9 202 41.1
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-25 120.9 202 41.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-25 120.9 318 35.5
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 2.1e-25 120.6 294 37.8
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.1e-25 120.6 306 38.2
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.1e-25 120.6 322 37.3
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 4.7e-25 119.4 202 41.1
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 8.0e-25 118.6 343 35.6
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.4e-24 117.9 295 35.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-24 117.9 202 41.1
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-24 117.9 202 41.1
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.8e-24 117.5 340 35.0
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.1e-24 116.7 300 35.7
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.2e-23 114.8 294 42.9
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.2e-23 114.8 303 42.2
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.5e-23 114.4 340 32.1
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.6e-23 113.6 329 34.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 2.6e-23 113.6 284 35.2
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.6e-23 113.6 303 34.0
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.4e-23 112.8 313 31.6
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-23 112.5 194 40.2
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.8e-23 112.5 312 34.6
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.3e-22 111.3 310 36.8
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.7e-22 110.9 313 31.3
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-22 110.9 194 40.7
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 8.3e-22 108.6 299 34.4
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.1e-21 108.2 293 41.0
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.4e-21 107.8 304 35.5
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-21 107.8 196 39.8
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 4.1e-21 106.3 331 34.1
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 4.1e-21 106.3 309 31.7
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 9.2e-21 105.1 296 33.8
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.2e-20 104.8 283 33.6
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 2.0e-20 104.0 316 34.2
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.7e-20 103.6 295 36.6
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.7e-20 103.6 295 36.6
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 4.6e-20 102.8 213 37.6
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.3e-19 101.3 291 34.4
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.3e-19 101.3 305 32.1
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.3e-19 101.3 336 30.7
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 3.0e-19 100.1 309 34.3
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 3.0e-19 100.1 287 33.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 3.9e-19 99.8 295 35.9
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 5.0e-19 99.4 297 32.7
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.1e-18 98.2 300 35.7
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.5e-18 97.8 163 43.6
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.9e-18 97.4 300 37.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 3.3e-18 96.7 322 33.5
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 5.6e-18 95.9 226 41.6
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 7.3e-18 95.5 294 34.4
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.4e-16 91.3 195 38.5
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.4e-16 91.3 304 32.2
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.8e-16 90.9 291 32.3
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 5.2e-16 89.4 333 30.6
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 6.8e-16 89.0 318 29.9
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 8.9e-16 88.6 294 33.0
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.0e-15 87.4 323 30.3
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 2.0e-15 87.4 278 31.7
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 3.4e-15 86.7 302 32.1
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 3.4e-15 86.7 281 33.1
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 4.4e-15 86.3 307 31.6
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 5.8e-15 85.9 300 33.0
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 5.8e-15 85.9 295 31.9
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.7e-14 84.3 278 33.1
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 3.7e-14 83.2 292 32.9
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 8.3e-14 82.0 325 30.8
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.1e-13 81.6 214 36.4
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 5.4e-13 79.3 322 30.4
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 7.1e-13 79.0 313 32.3
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 7.1e-13 79.0 281 31.0
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 7.1e-13 79.0 308 30.8
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 4.6e-12 76.3 197 41.1
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.0e-11 75.1 300 30.0
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 3.9e-11 73.2 78 55.1
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.1e-10 71.6 303 32.0
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 1.1e-10 71.6 234 32.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-10 71.2 361 29.4
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-10 71.2 155 41.3
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.5e-10 70.5 263 32.3
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.2e-09 68.2 127 37.8
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 4.7e-09 66.2 296 32.4
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.3e-08 63.9 129 34.1
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 4.0e-08 63.2 280 30.4
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 5.2e-08 62.8 76 46.1
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 6.8e-08 62.4 282 31.9
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 8.9e-08 62.0 259 34.7
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.2e-07 61.6 296 26.7
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.2e-07 61.6 83 48.2


User provided reference genes

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