Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.0e-117 425.2 226 100.0
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.8e-114 416.0 226 97.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.5e-111 406.4 226 95.1
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 7.5e-108 394.0 226 91.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.0e-104 383.6 227 90.7
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 2.5e-103 379.0 226 88.5
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 4.3e-103 378.3 227 88.5
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 4.3e-103 378.3 227 88.5
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.2e-102 376.7 226 88.1
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-101 373.2 227 86.8
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.3e-101 372.5 227 86.8
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 6.8e-101 370.9 226 88.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.2e-100 370.2 226 88.9
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 5.8e-100 367.9 226 88.1
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.8e-100 367.9 226 87.2
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 9.8e-100 367.1 231 83.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 8.3e-99 364.0 228 86.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 8.1e-94 347.4 227 80.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.5e-87 326.6 223 74.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.5e-87 326.6 223 74.0
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.9e-87 326.2 223 74.0
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.8e-86 322.4 225 72.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 8.9e-85 317.4 226 71.2
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 5.8e-84 314.7 223 70.9
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.3e-83 313.5 225 71.1
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.9e-83 311.6 226 69.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.4e-82 310.1 230 70.0
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.2e-82 308.9 225 69.3
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 9.3e-82 307.4 228 68.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.6e-81 306.6 222 68.9
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 2.7e-81 305.8 222 68.9
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.0e-80 303.9 222 68.5
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.6e-80 301.2 227 69.2
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.5e-79 299.3 225 67.1
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 4.3e-79 298.5 220 68.6
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 7.3e-79 297.7 220 68.2
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 9.6e-79 297.4 218 70.6
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.3e-78 297.0 227 66.5
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.1e-78 296.2 228 65.8
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.8e-77 293.1 225 65.8
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.4e-77 292.7 220 66.4
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.1e-77 292.4 226 65.0
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.0e-77 292.0 224 64.7
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 9.0e-77 290.8 221 64.7
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.5e-76 290.0 221 65.2
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.5e-76 290.0 220 65.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 4.4e-76 288.5 218 65.6
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.4e-76 288.5 220 65.9
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 4.4e-76 288.5 219 67.6
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.9e-76 287.3 218 65.1
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.3e-75 287.0 219 66.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-75 285.8 227 64.3
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.8e-75 285.4 227 65.2
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 8.4e-75 284.3 232 64.2
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.4e-74 282.7 227 61.2
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 4.2e-74 282.0 225 64.9
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.4e-74 281.6 220 64.5
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 5.4e-74 281.6 238 60.9
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.1e-74 281.2 248 59.7
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 7.1e-74 281.2 230 61.7
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 9.3e-74 280.8 225 64.0
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.3e-74 280.8 232 61.2
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.1e-73 279.6 224 62.9
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.5e-73 278.9 239 59.4
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 6.0e-73 278.1 163 89.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.0e-72 275.8 212 64.2
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.1e-72 275.0 223 62.8
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 8.7e-72 274.2 223 62.3
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.1e-71 273.9 220 65.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.9e-71 273.1 229 63.3
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.9e-71 273.1 224 59.4
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 3.3e-71 272.3 233 61.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 7.3e-71 271.2 238 58.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.6e-70 270.0 236 59.3
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.8e-70 269.2 231 61.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.8e-70 269.2 224 59.4
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-69 267.3 219 62.6
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.1e-69 267.3 224 62.1
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.0e-69 265.4 219 62.6
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 4.0e-69 265.4 220 59.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 6.9e-69 264.6 220 59.1
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.0e-68 263.1 220 60.9
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.6e-68 262.7 221 61.5
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.4e-68 262.3 221 58.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 3.4e-68 262.3 232 57.3
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 5.8e-68 261.5 223 60.5
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 5.8e-68 261.5 226 60.6
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 9.9e-68 260.8 216 62.0
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.2e-67 259.6 219 63.5
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.9e-67 259.2 221 59.7
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 3.8e-67 258.8 222 61.7
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 8.4e-67 257.7 226 58.8
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.2e-66 255.8 221 60.6
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 4.2e-66 255.4 233 55.8
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.5e-66 255.0 220 60.0
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 7.1e-66 254.6 214 61.2
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.2e-65 253.8 221 59.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.1e-65 253.1 233 57.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 3.5e-65 252.3 231 54.5
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 3.5e-65 252.3 276 52.2
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.6e-65 251.9 221 59.7
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.0e-64 250.8 223 58.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.3e-64 250.4 218 61.0
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.3e-64 250.4 186 66.1
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.8e-64 250.0 261 53.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 3.3e-63 245.7 225 58.7
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 5.6e-63 245.0 220 57.3
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.1e-61 239.2 229 55.9
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 5.3e-61 238.4 214 57.5
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.7e-59 233.4 216 54.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 6.5e-59 231.5 224 54.5
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 9.3e-58 227.6 163 70.6
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 6.0e-57 224.9 219 55.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.8e-56 223.4 246 49.2
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.3e-55 218.8 217 55.8
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 7.4e-55 218.0 241 49.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.2e-52 210.7 161 68.3
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.2e-52 210.7 174 60.3
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.5e-52 210.3 222 53.2
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 5.0e-51 205.3 168 61.3
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-50 204.1 176 60.8
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 9.3e-50 201.1 223 49.3
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.6e-49 200.3 162 66.7
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.3e-48 197.2 185 64.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.5e-47 193.7 145 68.3
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-46 190.7 141 70.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-46 190.3 222 52.3
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.2e-46 189.9 154 64.9
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 5.0e-43 178.7 221 45.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.7e-40 168.3 231 45.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.1e-39 167.5 221 42.5
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.5e-39 167.2 145 59.3
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.1e-37 161.0 187 48.1
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 5.3e-37 158.7 193 46.6
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.8e-35 152.5 225 47.1
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 9.4e-34 147.9 143 53.1
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.2e-33 147.5 116 67.2
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.1e-33 146.7 115 65.2
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.1e-33 146.7 239 39.7
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.6e-33 146.0 115 66.1
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 5.1e-32 142.1 218 36.2
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.6e-31 139.8 191 43.5
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.3e-30 137.5 126 57.9
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.1e-29 132.5 141 52.5
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.8e-27 125.9 216 34.3
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 8.5e-27 124.8 201 44.8
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 8.5e-27 124.8 201 44.8
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.1e-26 124.4 144 49.3
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.0e-24 115.9 181 40.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.3e-23 112.8 90 64.4
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 2.8e-22 109.8 190 43.2
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.4e-21 106.7 116 54.3
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 9.1e-21 104.8 98 55.1
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.0e-19 101.3 53 94.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.0e-19 101.3 91 63.7
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.5e-19 98.6 52 92.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 8.5e-19 98.2 53 92.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 8.5e-19 98.2 53 92.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 3.2e-18 96.3 154 39.6
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.4e-18 94.7 167 37.7
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.4e-18 94.7 78 60.3
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.4e-18 94.7 78 60.3
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.0e-16 91.3 85 55.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.4e-16 90.9 156 35.9
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.2e-15 87.8 70 60.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.2e-15 87.8 75 56.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.5e-15 87.4 89 50.6
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.0e-15 87.0 58 74.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.4e-15 86.3 101 44.6
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.8e-14 83.2 51 80.4
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.8e-14 82.4 75 58.7
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 8.3e-14 81.6 54 74.1
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 2.4e-13 80.1 74 52.7
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 7.0e-13 78.6 78 53.8
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 1.6e-12 77.4 85 51.8
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.2e-09 67.8 79 49.4
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.7e-09 66.6 88 40.9
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 1.0e-08 64.7 97 45.4
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.5e-07 60.8 53 56.6
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 2.2e-06 57.0 90 38.9


User provided reference genes

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