Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 2.1e-223 778.9 440 100.0
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 2.5e-192 675.6 444 89.2
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 5.3e-182 641.3 452 83.0
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 2.4e-179 632.5 435 80.0
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 1.9e-176 622.9 442 82.6
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 1.2e-165 587.0 437 76.9
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 1.0e-161 573.9 444 76.1
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 3.7e-159 565.5 438 77.4
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 1.1e-158 563.9 436 77.1
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 1.7e-156 556.6 437 75.7
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 1.1e-155 553.9 441 71.0
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 9.7e-152 540.8 438 70.3
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 2.2e-151 539.7 439 71.3
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 2.2e-151 539.7 439 71.3
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 7.7e-149 531.2 435 70.6
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 1.5e-144 516.9 437 72.8
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 3.0e-137 492.7 437 66.1
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 6.7e-137 491.5 438 65.8
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 6.7e-137 491.5 438 65.8
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 1.5e-136 490.3 437 65.9
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 9.7e-136 487.6 438 65.8
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 8.9e-81 305.1 441 49.9
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 3.2e-78 296.6 477 50.1
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 4.5e-64 249.6 463 43.2
A04p27950 Brassica napus HOM05D003485 ORTHO05D004004 1.4e-62 244.6 216 67.1
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 7.6e-56 222.2 543 34.8
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.0e-55 221.9 510 37.3
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.7e-55 221.1 519 37.0
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 2.2e-55 220.7 472 36.0
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 1.1e-54 218.4 561 34.0
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 9.3e-54 215.3 519 34.7
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 2.1e-53 214.2 538 39.2
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 6.0e-53 212.6 541 35.5
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 7.9e-53 212.2 546 35.5
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 1.8e-52 211.1 510 36.1
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 1.8e-52 211.1 523 35.9
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 6.7e-52 209.1 553 34.9
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.1e-51 208.4 531 36.5
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 1.5e-51 208.0 533 35.8
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.9e-51 207.6 524 35.3
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 1.9e-51 207.6 523 35.8
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 5.7e-51 206.1 470 36.0
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 7.4e-51 205.7 524 35.3
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 7.4e-51 205.7 538 39.4
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 9.6e-51 205.3 549 34.2
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 2.1e-50 204.1 531 37.9
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 1.1e-49 201.8 533 34.9
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 1.1e-49 201.8 140 74.3
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 1.1e-49 201.8 516 34.7
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 1.1e-49 201.8 519 36.2
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 1.1e-49 201.8 554 35.2
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 1.4e-49 201.4 542 33.8
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 1.8e-49 201.1 520 36.9
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 1.8e-49 201.1 562 34.5
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 4.1e-49 199.9 519 36.8
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 4.1e-49 199.9 520 36.9
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 5.3e-49 199.5 520 36.5
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.3e-49 199.5 527 34.9
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 6.9e-49 199.1 527 34.9
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 1.2e-48 198.4 549 38.6
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.2e-48 198.4 520 32.9
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 1.5e-48 198.0 511 34.8
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 2.0e-48 197.6 519 36.8
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 2.0e-48 197.6 538 35.5
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 2.6e-48 197.2 529 35.5
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.8e-48 196.1 545 32.8
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.8e-48 196.1 545 32.8
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.3e-47 194.9 518 38.0
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 1.3e-47 194.9 525 34.7
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 2.9e-47 193.7 524 34.5
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 2.9e-47 193.7 515 37.7
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.0e-47 193.0 545 31.2
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.4e-46 191.4 511 37.8
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.4e-46 191.4 559 34.0
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 4.2e-46 189.9 453 38.2
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 4.2e-46 189.9 574 33.4
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 7.2e-46 189.1 528 34.8
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 7.2e-46 189.1 535 35.1
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 1.6e-45 188.0 554 33.0
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 2.7e-45 187.2 559 36.9
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 3.5e-45 186.8 503 35.0
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 3.5e-45 186.8 517 34.8
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 3.5e-45 186.8 479 34.0
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 6.1e-45 186.0 507 36.5
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 2.3e-44 184.1 484 36.8
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 5.1e-44 183.0 516 33.7
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 5.1e-44 183.0 516 33.7
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 6.7e-44 182.6 487 35.3
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 8.7e-44 182.2 543 34.4
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.5e-43 181.4 529 33.6
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 9.7e-43 178.7 492 36.2
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 9.7e-43 178.7 496 34.3
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 1.6e-42 177.9 554 34.1
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 1.6e-42 177.9 461 36.2
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 2.8e-42 177.2 500 35.2
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 6.3e-42 176.0 525 38.7
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 8.2e-42 175.6 489 31.7
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.4e-41 174.9 570 30.7
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 2.4e-41 174.1 518 34.0
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 4.1e-41 173.3 484 33.5
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 6.9e-41 172.6 453 32.7
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 9.0e-41 172.2 536 31.9
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 3.4e-40 170.2 541 34.9
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 3.4e-40 170.2 436 37.6
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 3.4e-40 170.2 446 35.4
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 4.5e-40 169.9 452 33.6
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 1.0e-39 168.7 524 29.8
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 1.0e-39 168.7 498 32.9
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.3e-39 168.3 534 31.3
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 2.2e-39 167.5 519 30.4
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 5.0e-39 166.4 447 39.6
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 6.5e-39 166.0 489 33.9
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 2.5e-38 164.1 512 32.0
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 4.2e-38 163.3 521 29.4
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 1.2e-37 161.8 514 35.8
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.6e-37 161.4 508 37.4
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 1.6e-37 161.4 508 31.9
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 1.6e-37 161.4 462 33.1
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 3.6e-37 160.2 526 32.5
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 1.0e-36 158.7 501 32.1
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 3.0e-36 157.1 508 31.3
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 6.7e-36 156.0 484 31.0
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 8.8e-36 155.6 488 35.0
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 7.4e-35 152.5 365 36.2
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 2.2e-34 151.0 509 32.4
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 2.2e-34 151.0 552 33.9
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 8.2e-34 149.1 518 29.2
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 1.1e-33 148.7 500 31.2
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 1.1e-33 148.7 476 30.7
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 2.4e-33 147.5 492 29.7
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 3.1e-33 147.1 483 30.6
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 1.2e-32 145.2 486 32.1
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 2.0e-32 144.4 440 32.7
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 1.0e-31 142.1 521 31.1
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 3.8e-31 140.2 519 29.9
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 3.8e-31 140.2 488 29.1
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 1.4e-30 138.3 472 33.1
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.2e-30 136.7 499 30.5
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 1.2e-29 135.2 539 28.6
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 2.1e-29 134.4 533 28.1
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 2.1e-29 134.4 567 30.7
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.7e-29 134.0 498 30.7
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 4.7e-29 133.3 492 27.8
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 7.9e-29 132.5 522 29.1
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 5.1e-28 129.8 510 29.2
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 6.7e-28 129.4 477 32.3
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 3.3e-27 127.1 572 30.2
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 3.3e-27 127.1 494 31.0
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 3.3e-27 127.1 566 30.6
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 4.4e-27 126.7 510 33.3
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 4.4e-27 126.7 333 34.8
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 5.7e-27 126.3 522 31.2
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 5.7e-27 126.3 522 31.2
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 5.7e-27 126.3 283 36.0
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 1.3e-26 125.2 532 29.3
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 2.8e-26 124.0 351 30.5
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 1.4e-25 121.7 388 34.5
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 1.4e-25 121.7 281 36.7
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 2.6e-24 117.5 493 31.2
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 3.8e-23 113.6 588 27.9
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.5e-22 111.7 467 30.2
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 3.2e-22 110.5 279 35.8
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 3.2e-22 110.5 384 34.4
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 3.2e-22 110.5 363 31.4
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 5.5e-22 109.8 440 30.9
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 9.4e-22 109.0 294 31.6
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 6.1e-21 106.3 516 29.1
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 6.1e-21 106.3 493 29.8
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 4.0e-20 103.6 270 33.7
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 5.7e-19 99.8 282 35.1
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 9.7e-19 99.0 281 38.1
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 2.4e-17 94.4 378 29.4
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 5.3e-17 93.2 320 36.9
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 7.0e-17 92.8 242 36.0
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 4.5e-16 90.1 260 34.2
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 1.0e-15 89.0 282 42.9
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 5.0e-15 86.7 284 29.2
unitig_578.g15766 Utricularia gibba HOM05D003485 ORTHO05D004004 4.7e-13 80.1 328 26.5
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 8.0e-13 79.3 228 31.1
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.2e-11 75.5 274 32.8
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 3.4e-11 73.9 451 26.2
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 5.7e-11 73.2 206 31.6
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 2.8e-10 70.9 442 25.1
unitig_26.g9244 Utricularia gibba HOM05D003485 ORTHO05D004004 1.4e-09 68.6 317 29.7
SGA_v2.0_scaffold40G15384 Striga asiatica HOM05D003485 ORTHO05D004004 4.2e-06 57.0 244 29.1


User provided reference genes

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