Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.8e-260 902.1 470 100.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.0e-244 848.2 470 92.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.6e-221 772.7 475 84.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.5e-206 722.2 477 79.5
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.4e-201 706.4 478 77.2
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.4e-201 705.7 481 76.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.9e-193 679.5 476 75.6
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.4e-188 662.5 477 73.2
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 5.2e-188 661.4 462 75.1
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 9.9e-187 657.1 472 73.5
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 3.2e-185 652.1 479 72.7
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.7e-183 646.4 474 73.2
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.0e-183 645.6 472 73.1
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 5.6e-182 641.3 475 72.6
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-181 639.0 472 72.5
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.5e-179 633.3 476 71.4
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 9.9e-179 630.6 476 71.6
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 6.4e-178 627.9 470 71.3
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.2e-177 625.2 470 71.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-176 622.5 473 70.8
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.8e-175 619.8 478 70.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 3.3e-174 615.5 484 65.3
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 4.3e-174 615.1 475 70.3
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 6.2e-173 611.3 483 65.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.4e-172 610.1 484 64.7
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 5.3e-172 608.2 493 64.9
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 6.9e-172 607.8 484 64.9
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 6.9e-172 607.8 484 64.9
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.3e-170 603.6 484 64.9
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.7e-167 590.9 486 62.3
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 3.7e-165 585.5 492 61.2
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.7e-165 585.5 484 62.6
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.8e-164 583.2 473 67.7
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 3.1e-164 582.4 479 63.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.5e-163 580.1 484 61.0
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.0e-162 577.4 485 61.2
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.7e-162 576.6 484 62.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 7.1e-161 571.2 486 62.6
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.6e-160 568.5 505 59.0
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.8e-159 566.6 489 60.5
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.1e-158 563.9 485 59.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.5e-158 562.8 492 60.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.6e-157 560.1 454 63.9
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.6e-157 560.1 494 60.5
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 4.8e-157 558.5 479 62.0
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.4e-156 557.0 490 58.8
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 2.4e-156 556.2 490 59.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.5e-155 552.0 490 58.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.5e-155 552.0 489 59.7
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 4.5e-155 552.0 481 59.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 5.9e-155 551.6 485 61.9
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 5.0e-154 548.5 456 61.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.1e-153 547.4 486 58.8
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.2e-153 545.4 485 58.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.6e-152 542.3 484 60.1
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 7.9e-152 541.2 499 58.3
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.0e-151 540.8 499 58.9
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.0e-151 539.3 497 58.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.5e-150 537.0 483 59.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.3e-149 533.9 477 57.4
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 8.2e-149 531.2 488 58.2
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.4e-148 530.4 491 57.8
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 2.0e-147 526.6 494 56.9
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.5e-147 525.4 484 56.0
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.2e-146 523.1 497 56.9
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.8e-146 522.3 478 56.7
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.8e-146 522.3 511 56.4
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.0e-146 521.9 488 57.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.1e-145 520.8 497 57.5
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.2e-145 519.2 488 56.6
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.4e-145 517.7 497 56.5
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-144 517.3 515 53.4
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.1e-144 516.5 484 55.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 7.9e-144 514.6 456 58.1
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.0e-143 514.2 453 59.4
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.4e-143 513.8 484 55.4
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.8e-143 513.5 489 56.4
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.3e-143 513.1 434 61.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.0e-143 512.7 474 56.3
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.8e-143 511.1 470 56.2
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 5.7e-142 508.4 490 54.9
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 7.4e-142 508.1 488 55.3
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-140 504.2 487 55.6
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.1e-140 502.7 484 55.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.1e-140 502.7 484 56.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 7.0e-140 501.5 484 56.0
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.1e-140 501.1 507 52.9
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.6e-139 499.6 506 54.7
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.0e-138 497.7 487 56.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.7e-138 496.9 486 56.0
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.2e-138 496.5 486 54.7
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.9e-138 496.1 443 59.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.5e-138 495.0 462 55.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.1e-137 494.2 481 56.3
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.2e-137 492.7 484 53.5
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 3.6e-136 489.2 486 54.1
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 6.1e-136 488.4 426 59.9
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.0e-135 486.1 493 54.6
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.5e-134 483.8 493 54.4
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 2.6e-134 483.0 441 57.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.6e-134 483.0 484 54.3
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 3.3e-134 482.6 491 53.6
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 6.3e-133 478.4 488 53.5
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.4e-132 476.5 492 52.8
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.6e-131 473.0 484 52.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.5e-131 472.6 481 53.4
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.3e-130 470.7 507 52.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.3e-130 470.7 433 56.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 2.1e-128 463.4 490 53.9
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 3.6e-128 462.6 581 45.8
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 6.1e-128 461.8 544 49.3
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 5.2e-127 458.8 405 57.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.2e-126 457.6 472 53.2
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.4e-126 455.7 454 55.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 4.8e-125 452.2 398 64.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.3e-122 444.1 460 52.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.7e-122 443.7 517 49.7
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.9e-121 440.3 492 51.6
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.7e-120 436.4 532 47.0
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.6e-120 436.0 532 47.0
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.5e-118 430.6 451 52.3
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 3.1e-116 422.9 403 53.6
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.0e-114 417.9 452 51.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.1e-112 410.2 484 47.3
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 8.0e-112 408.3 455 50.5
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.2e-110 404.4 483 48.9
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.4e-110 402.5 383 54.8
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 7.5e-110 401.7 484 49.0
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 8.3e-109 398.3 470 48.1
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.3e-106 391.0 498 47.6
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 4.1e-100 369.4 489 45.6
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.7e-98 364.0 450 48.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.5e-97 360.1 395 51.9
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.0e-95 352.8 486 46.9
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 3.3e-89 333.2 434 44.2
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.2e-88 331.3 216 70.4
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 4.4e-86 322.8 482 43.2
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 7.5e-86 322.0 216 67.1
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.9e-82 309.7 409 47.7
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 6.6e-82 308.9 455 39.6
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 6.6e-82 308.9 342 51.2
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.0e-78 297.4 374 44.4
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 2.9e-77 293.5 222 59.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.4e-76 291.2 298 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 2.3e-74 283.9 284 51.1
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 8.1e-72 275.4 360 42.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.3e-61 241.5 176 64.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.8e-47 194.5 156 59.6
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.4e-46 190.3 134 62.7
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.1e-44 185.3 261 37.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 3.2e-44 183.7 313 41.9
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 7.4e-41 172.6 232 47.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.7e-37 161.4 260 40.0
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 4.6e-35 153.3 244 32.4
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.2e-32 142.5 190 36.8
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 6.5e-29 132.9 171 46.8
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 6.5e-29 132.9 94 60.6
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 3.1e-23 114.0 76 67.1
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.7e-21 108.2 122 52.5
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.5e-20 105.1 68 63.2
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.0e-18 99.0 115 52.2
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 6.3e-16 89.7 275 26.5
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.0e-13 80.1 93 46.2
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.5e-13 79.7 56 64.3
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 9.8e-09 65.9 43 74.4
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 2.2e-08 64.7 71 49.3
BolC1t02302H Brassica oleracea HOM05D026626 ORTHO05D027483 3.7e-08 63.9 124 34.7
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 8.3e-08 62.8 124 33.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.7e-06 57.8 54 46.3


User provided reference genes

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