Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.8e-113 412.5 200 100.0
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.5e-99 365.5 186 94.1
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.0e-84 315.5 185 81.6
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 5.3e-81 304.7 186 76.9
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.5e-80 301.6 197 72.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 9.4e-78 293.9 185 77.3
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.8e-74 282.3 183 74.9
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 2.8e-74 282.3 185 74.6
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 3.7e-74 282.0 188 73.4
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 3.7e-74 282.0 188 73.4
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 8.2e-74 280.8 187 72.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.4e-73 279.3 188 71.8
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.0e-71 273.9 182 68.7
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 2.5e-70 269.2 188 69.7
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 2.5e-70 269.2 188 69.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.8e-68 260.8 184 67.4
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.8e-66 255.8 177 66.7
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.4e-65 253.4 193 62.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.4e-65 253.4 196 63.3
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.8e-65 253.1 185 64.3
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.4e-65 252.7 187 64.7
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 7.0e-65 251.1 196 62.8
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.2e-64 250.4 197 60.9
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 3.5e-64 248.8 199 59.8
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 3.5e-64 248.8 179 66.5
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 3.5e-64 248.8 184 62.5
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 5.9e-64 248.1 166 72.3
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 5.9e-64 248.1 191 61.8
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 5.9e-64 248.1 179 63.7
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 7.7e-64 247.7 179 63.1
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 7.7e-64 247.7 182 62.6
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.7e-63 246.5 188 61.2
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.9e-63 245.7 188 61.7
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.9e-63 245.7 184 63.0
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 5.0e-63 245.0 175 64.0
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 5.0e-63 245.0 179 62.6
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 8.5e-63 244.2 177 64.4
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 8.5e-63 244.2 177 64.4
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.9e-62 243.0 179 62.0
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.9e-62 243.0 188 61.7
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.9e-62 243.0 179 63.1
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.5e-62 242.7 176 62.5
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 3.2e-62 242.3 178 63.5
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 3.2e-62 242.3 181 63.5
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 4.2e-62 241.9 179 62.0
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 5.5e-62 241.5 177 64.4
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 5.5e-62 241.5 181 62.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.5e-62 241.5 181 63.0
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.2e-61 240.4 198 58.6
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.2e-61 240.4 183 60.7
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.2e-61 240.4 184 62.0
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.1e-61 239.6 198 58.6
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.7e-61 239.2 179 63.1
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.6e-61 238.8 181 61.3
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.7e-61 238.4 184 60.9
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 6.1e-61 238.0 187 62.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 2.3e-60 236.1 209 56.0
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.3e-60 236.1 181 60.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 2.3e-60 236.1 191 58.1
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 3.0e-60 235.7 179 61.5
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 3.0e-60 235.7 183 62.3
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 4.0e-60 235.3 199 60.3
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 5.2e-60 235.0 183 62.8
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 5.2e-60 235.0 182 61.0
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 6.7e-60 234.6 179 60.3
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 8.8e-60 234.2 180 58.3
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 8.8e-60 234.2 182 59.3
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.5e-59 233.4 173 62.4
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.5e-59 233.4 181 61.3
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.0e-59 233.0 182 61.0
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.0e-59 233.0 180 62.8
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 3.3e-59 232.3 179 59.8
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.7e-59 231.5 181 59.7
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.5e-59 231.1 179 60.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.3e-58 230.3 181 60.8
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.8e-58 229.2 179 59.8
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 6.3e-58 228.0 188 59.6
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.1e-57 227.3 185 65.4
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.1e-57 227.3 190 57.4
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.4e-57 226.9 170 67.1
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 1.8e-57 226.5 181 58.0
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 2.4e-57 226.1 179 57.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 3.1e-57 225.7 182 59.9
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 5.3e-57 224.9 191 56.0
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 7.0e-57 224.6 168 62.5
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.6e-56 223.4 182 59.9
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 4.5e-56 221.9 161 65.8
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 4.5e-56 221.9 184 59.2
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 7.7e-56 221.1 188 56.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.9e-55 219.2 163 62.6
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 5.0e-55 218.4 162 63.6
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 5.0e-55 218.4 176 55.7
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 6.5e-55 218.0 182 58.2
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 8.5e-55 217.6 216 53.2
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.5e-54 216.9 179 58.1
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.9e-54 216.5 166 63.9
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 2.5e-54 216.1 180 60.0
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.1e-53 213.0 199 52.8
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 8.0e-53 211.1 177 58.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.8e-52 209.9 182 55.5
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.0e-52 209.1 182 55.5
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.0e-52 208.8 191 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 6.8e-52 208.0 178 53.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 2.0e-51 206.5 201 52.2
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.3e-50 203.8 175 58.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.3e-50 203.8 184 53.8
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 6.3e-50 201.4 169 58.0
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 9.1e-49 197.6 152 60.5
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.1e-46 190.7 186 48.9
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-44 183.0 167 50.3
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-43 180.6 162 50.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.4e-43 179.1 194 47.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 5.7e-43 178.3 134 57.5
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.8e-43 177.6 169 49.1
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.7e-42 176.8 135 59.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 4.9e-42 175.3 169 52.7
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.3e-42 174.9 151 53.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.8e-41 173.3 131 60.3
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 5.4e-41 171.8 128 60.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.5e-40 168.7 164 47.6
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.0e-36 157.5 112 69.6
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.0e-36 155.6 135 51.1
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 5.2e-36 155.2 185 44.3
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 8.3e-34 147.9 113 59.3
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-33 147.5 124 53.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.4e-33 147.1 177 46.3
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 3.2e-33 146.0 183 42.1
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.2e-33 144.4 168 44.0
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 3.9e-31 139.0 187 41.2
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.0e-29 131.3 120 51.7
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 4.9e-26 122.1 93 55.9
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-25 120.6 179 38.5
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.4e-25 120.6 87 64.4
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-19 99.4 89 48.3
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.1e-12 76.3 115 38.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 7.6e-11 71.6 44 77.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.7e-10 70.5 48 70.8
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 4.9e-10 68.9 106 35.8
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.9e-10 68.9 53 56.6
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.1e-08 63.5 82 42.7
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.3e-07 60.8 43 65.1
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.7e-07 60.5 43 65.1


User provided reference genes

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