Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 5.5e-133 477.6 239 100.0
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 5.0e-126 454.5 240 95.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 3.2e-125 451.8 239 94.6
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.1e-122 443.4 239 92.1
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 9.1e-112 407.1 245 87.3
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 5.9e-111 404.4 241 86.7
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 6.7e-107 391.0 246 85.0
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.1e-106 390.2 249 83.1
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 4.4e-106 388.3 242 84.7
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 4.4e-106 388.3 242 84.7
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 3.7e-105 385.2 246 82.9
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 3.1e-104 382.1 245 83.7
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 7.0e-104 380.9 250 82.4
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 1.0e-102 377.1 243 83.5
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 3.8e-102 375.2 248 81.9
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 8.8e-99 364.0 247 79.4
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 4.7e-92 341.7 218 83.0
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.6e-87 326.6 245 70.2
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.1e-85 320.5 246 69.9
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 2.1e-84 316.2 247 69.6
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.8e-83 313.2 247 68.0
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.0e-83 312.4 244 67.6
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 3.0e-83 312.4 246 68.7
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 6.8e-83 311.2 244 69.3
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 2.6e-82 309.3 244 67.2
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.6e-82 309.3 246 67.5
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 9.8e-82 307.4 244 66.8
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.7e-81 306.6 243 66.7
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.2e-81 306.2 246 65.4
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 4.9e-81 305.1 243 66.7
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.4e-80 303.5 248 65.3
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 4.1e-80 302.0 247 65.6
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 4.1e-80 302.0 244 64.3
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 5.4e-80 301.6 243 66.7
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 9.2e-80 300.8 247 64.8
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.2e-79 300.4 247 68.0
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.2e-79 300.4 254 65.4
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.6e-79 300.1 246 65.0
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 1.6e-79 300.1 246 63.8
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.6e-79 300.1 245 64.9
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.6e-79 300.1 245 66.9
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 2.7e-79 299.3 247 65.2
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.7e-79 299.3 247 65.2
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.7e-79 299.3 247 65.2
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.5e-79 298.9 247 65.2
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 4.5e-79 298.5 243 64.2
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 7.8e-79 297.7 247 64.8
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 7.8e-79 297.7 244 65.6
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 1.7e-78 296.6 245 65.7
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 1.7e-78 296.6 245 65.3
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 2.3e-78 296.2 250 64.4
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 2.3e-78 296.2 249 64.3
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.8e-78 295.4 247 64.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.6e-78 294.7 246 64.6
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 6.6e-78 294.7 257 66.1
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 6.6e-78 294.7 244 64.8
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 8.6e-78 294.3 239 66.9
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.1e-77 293.9 238 66.8
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.5e-77 293.5 247 66.4
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.5e-77 293.5 246 65.0
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 1.9e-77 293.1 246 63.0
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.9e-77 293.1 245 65.7
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.5e-77 292.7 246 65.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.5e-77 292.7 251 63.7
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.3e-77 292.4 246 64.6
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 4.3e-77 292.0 255 64.3
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 5.6e-77 291.6 245 65.3
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 5.6e-77 291.6 242 64.5
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 7.3e-77 291.2 249 64.7
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 7.3e-77 291.2 247 64.4
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.3e-77 291.2 246 61.4
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 9.5e-77 290.8 250 65.2
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.1e-76 289.7 258 62.0
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.1e-76 289.7 245 64.5
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 2.8e-76 289.3 244 61.9
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.0e-75 287.3 193 73.6
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.4e-75 287.0 245 62.0
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.4e-75 287.0 242 64.0
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.8e-75 286.6 243 62.6
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.8e-75 286.6 211 67.8
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 2.3e-75 286.2 240 64.2
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 5.2e-75 285.0 235 63.0
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 6.8e-75 284.6 245 62.4
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 8.9e-75 284.3 253 62.8
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.6e-74 282.7 250 64.0
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.4e-74 282.3 246 61.8
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 3.4e-74 282.3 195 74.4
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 5.8e-74 281.6 245 64.1
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 5.8e-74 281.6 193 74.1
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 7.5e-74 281.2 247 61.1
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 2.2e-73 279.6 229 64.2
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.9e-73 279.3 246 61.8
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 3.7e-73 278.9 221 66.5
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.1e-72 277.3 248 62.9
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.1e-72 277.3 242 62.8
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-72 277.3 184 72.8
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 2.4e-72 276.2 221 65.2
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 4.1e-72 275.4 239 62.3
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.0e-72 274.6 228 64.0
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 9.2e-72 274.2 246 60.6
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 2.7e-71 272.7 247 59.5
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 1.0e-70 270.8 194 70.1
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 8.6e-70 267.7 232 63.8
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.5e-69 266.9 188 71.8
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.5e-69 266.2 240 59.6
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.6e-68 263.5 207 63.8
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 6.2e-68 261.5 193 68.4
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 8.9e-67 257.7 228 63.2
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 3.4e-66 255.8 226 61.5
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.3e-65 253.8 164 75.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 4.1e-64 248.8 254 54.3
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 6.0e-63 245.0 217 61.8
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.6e-61 238.4 166 69.3
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.8e-60 236.1 234 56.0
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.4e-56 223.8 111 93.7
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 5.4e-56 221.9 210 61.0
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 3.1e-51 206.1 120 78.3
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.3e-49 200.7 121 75.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 5.4e-48 195.3 121 76.0
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.1e-43 181.0 178 52.2
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 6.9e-43 178.3 182 48.4
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.3e-41 174.1 165 56.4
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.9e-41 172.2 204 49.5
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 1.4e-40 170.6 149 54.4
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.7e-39 166.4 162 50.0
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.6e-38 161.8 191 46.6
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.9e-32 143.7 192 42.7
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.0e-26 123.6 172 39.0
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 3.0e-22 109.8 68 72.1
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 5.8e-18 95.5 162 31.5
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.4e-16 90.9 119 52.1
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.8e-11 73.9 181 30.4
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.0e-10 70.5 103 44.7
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.4e-10 69.7 115 40.9


User provided reference genes

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