Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35730 Arabidopsis thaliana HOM05D008102 ORTHO05D010266 2.6e-56 221.9 116 100.0
AL4G31820 Arabidopsis lyrata HOM05D008102 ORTHO05D010266 8.2e-50 200.3 120 90.0
Thhalv10017440m.g Eutrema salsugineum HOM05D008102 ORTHO05D010266 3.6e-45 184.9 116 82.8
Carub.0004s1746 Capsella rubella HOM05D008102 ORTHO05D010266 5.1e-44 181.0 119 82.4
CARHR129970 Cardamine hirsuta HOM05D008102 ORTHO05D010266 5.7e-43 177.6 116 83.6
BcaC02g07675 Brassica carinata HOM05D008102 ORTHO05D010266 3.8e-39 164.9 119 76.5
A04p27180 Brassica napus HOM05D008102 ORTHO05D010266 5.0e-39 164.5 111 79.3
C04p64690 Brassica napus HOM05D008102 ORTHO05D010266 5.0e-39 164.5 111 79.3
BraA04t18216Z Brassica rapa HOM05D008102 ORTHO05D010266 5.0e-39 164.5 111 79.3
Sp4g18000 Schrenkiella parvula HOM05D008102 ORTHO05D010266 2.5e-38 162.2 120 75.8
BolC4t27946H Brassica oleracea HOM05D008102 ORTHO05D010266 2.9e-31 138.7 95 77.9
C04p12250 Brassica napus HOM05D008102 ORTHO05D010266 4.5e-24 114.8 89 68.5
BolC4t22872H Brassica oleracea HOM05D008102 ORTHO05D010266 4.5e-24 114.8 89 68.5
THA.LOC109116598 Tarenaya hassleriana HOM05D008102 ORTHO05D010266 3.7e-18 95.1 106 50.9
BcaB06g28866 Brassica carinata HOM05D008102 ORTHO05D010266 7.7e-16 87.4 70 67.1
Sopen08g027200 Solanum pennellii HOM05D008102 ORTHO05D010266 4.0e-12 75.1 81 43.2
Manes.02G038800 Manihot esculenta HOM05D008102 ORTHO05D010266 8.8e-12 73.9 81 44.4
Glyma.17G141000 Glycine max HOM05D008102 ORTHO05D010266 1.5e-11 73.2 68 51.5
PGSC0003DMG400004757 Solanum tuberosum HOM05D008102 ORTHO05D010266 1.5e-11 73.2 69 46.4
Gohir.D12G220100 Gossypium hirsutum HOM05D008102 ORTHO05D010266 4.4e-11 71.6 60 51.7
Gohir.A12G217600 Gossypium hirsutum HOM05D008102 ORTHO05D010266 5.7e-11 71.2 98 39.8
Psat4g071720 Pisum sativum HOM05D008102 ORTHO05D010266 5.7e-11 71.2 62 46.8
Ah.12g056760 Amaranthus hybridus HOM05D008102 ORTHO05D010266 1.7e-10 69.7 61 50.8
Hund14530 Selenicereus undatus HOM05D008102 ORTHO05D010266 1.7e-10 69.7 63 49.2
Gorai.008G235800 Gossypium raimondii HOM05D008102 ORTHO05D010266 2.2e-10 69.3 60 50.0
Rhsim07G0108100 Rhododendron simsii HOM05D008102 ORTHO05D010266 2.2e-10 69.3 102 37.3
EL10Ac5g13056 Beta vulgaris HOM05D008102 ORTHO05D010266 2.8e-10 68.9 61 47.5
CiPaw.11G153400 Carya illinoinensis HOM05D008102 ORTHO05D010266 4.8e-10 68.2 65 47.7
AUR62039959 Chenopodium quinoa HOM05D008102 ORTHO05D010266 1.1e-09 67.0 59 49.2
VMungo0251G3084 Vigna mungo HOM05D008102 ORTHO05D010266 1.1e-09 67.0 86 40.7
Glyma.05G058600 Glycine max HOM05D008102 ORTHO05D010266 1.4e-09 66.6 94 41.5
Potri.003G110500 Populus trichocarpa HOM05D008102 ORTHO05D010266 1.8e-09 66.2 104 36.5
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.4e-09 65.9 62 50.0
Nn1g01035 Nelumbo nucifera HOM05D008102 ORTHO05D010266 3.1e-09 65.5 105 33.3
Lj4g0008790 Lotus japonicus HOM05D008102 ORTHO05D010266 4.1e-09 65.1 101 34.7
Sabra03G0076600 Salix brachista HOM05D008102 ORTHO05D010266 4.1e-09 65.1 104 34.6
Phvul.003G219900 Phaseolus vulgaris HOM05D008102 ORTHO05D010266 5.4e-09 64.7 68 47.1
PSO782G4576 Papaver somniferum HOM05D008102 ORTHO05D010266 1.2e-08 63.5 64 48.4
QL12p012528 Quercus lobata HOM05D008102 ORTHO05D010266 1.2e-08 63.5 64 42.2
Nitab4.5_0008481g0050 Nicotiana tabacum HOM05D008102 ORTHO05D010266 1.6e-08 63.2 88 37.5
Solyc08g078730.3 Solanum lycopersicum HOM05D008102 ORTHO05D010266 1.6e-08 63.2 69 43.5
TPR.G37625 Trifolium pratense HOM05D008102 ORTHO05D010266 1.6e-08 63.2 80 45.0
Os01g0927300 Oryza sativa ssp. japonica HOM05D008102 ORTHO05D010266 3.5e-08 62.0 58 51.7
Peaxi162Scf00002g01718 Petunia axillaris HOM05D008102 ORTHO05D010266 3.5e-08 62.0 63 44.4
CDE12G0094 Ceratophyllum demersum HOM05D008102 ORTHO05D010266 4.5e-08 61.6 59 47.5
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 5.9e-08 61.2 52 51.9
Sed0012982 Sechium edule HOM05D008102 ORTHO05D010266 7.7e-08 60.8 62 43.5
Lalb_Chr05g0225771 Lupinus albus HOM05D002420 ORTHO05D002422 1.0e-07 60.5 103 35.9
GSVIVG01001314001 Vitis vinifera HOM05D008102 ORTHO05D010266 1.0e-07 60.5 91 33.0
CsaV3_3G002790 Cucumis sativus L. HOM05D008102 ORTHO05D010266 1.3e-07 60.1 101 36.6
HanXRQChr03g0088621 Helianthus annuus HOM05D008102 ORTHO05D010266 2.3e-07 59.3 73 37.0
Nn6g33980 Nelumbo nucifera HOM05D008102 ORTHO05D010266 2.9e-07 58.9 109 33.9
SGA_v2.0_scaffold120G32878 Striga asiatica HOM05D008102 ORTHO05D010266 2.9e-07 58.9 92 32.6
Zm00001eb363820 Zea mays HOM05D008102 ORTHO05D010266 2.9e-07 58.9 58 48.3
TWI81G0747 Tripterygium wilfordii HOM05D008102 ORTHO05D010266 3.8e-07 58.5 64 45.3
Thecc.03G253100 Theobroma cacao HOM05D008102 ORTHO05D010266 8.6e-07 57.4 78 38.5
Cpa.g.sc29.145 Carica papaya HOM05D008102 ORTHO05D010266 2.5e-06 55.8 56 42.9
Eucgr.L01885 Eucalyptus grandis HOM05D008102 ORTHO05D010266 2.5e-06 55.8 46 45.7
PGR031G0607 Punica granatum HOM05D008102 ORTHO05D010266 2.5e-06 55.8 94 39.4
PSO063G5269 Papaver somniferum HOM05D008102 ORTHO05D010266 4.2e-06 55.1 64 45.3
SEGI_08725 Sequoiadendron giganteum HOM05D008102 ORTHO05D010266 4.2e-06 55.1 61 44.3
GSVIVG01006641001 Vitis vinifera HOM05D008102 ORTHO05D010266 4.2e-06 55.1 59 39.0
SEGI_37200 Sequoiadendron giganteum HOM05D008102 ORTHO05D010266 5.5e-06 54.7 61 45.9
Medtr4g101025 Medicago truncatula HOM05D008102 ORTHO05D010266 7.2e-06 54.3 42 59.5


User provided reference genes

Program Settings