Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35585 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 4.3e-71 271.2 133 100.0
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 1.6e-36 156.4 81 93.8
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 1.2e-33 146.7 81 87.7
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 4.0e-32 141.7 81 86.4
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 8.3e-30 134.0 82 81.7
AL1G46040 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 5.3e-29 131.3 82 81.7
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 7.0e-29 131.0 82 80.5
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 9.1e-29 130.6 82 80.5
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 1.0e-27 127.1 81 79.0
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 1.0e-27 127.1 81 79.0
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 1.0e-27 127.1 81 79.0
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 1.0e-27 127.1 81 76.5
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 1.7e-27 126.3 81 76.5
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 2.2e-27 125.9 81 77.8
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 2.2e-27 125.9 81 77.8
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 2.2e-27 125.9 82 78.0
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 2.9e-27 125.6 81 77.8
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 2.9e-27 125.6 81 77.8
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 2.9e-27 125.6 81 75.3
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 2.9e-27 125.6 81 75.3
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 2.9e-27 125.6 81 75.3
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 2.9e-27 125.6 81 75.3
BcaB03g13776 Brassica carinata HOM05D003603 ORTHO05D004186 3.8e-27 125.2 81 77.8
BcaC05g27220 Brassica carinata HOM05D003603 ORTHO05D004186 6.5e-27 124.4 81 77.8
BolC5t31853H Brassica oleracea HOM05D003603 ORTHO05D004186 6.5e-27 124.4 81 77.8
Potri.001G135000 Populus trichocarpa HOM05D003603 ORTHO05D004186 1.1e-26 123.6 81 74.1
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 1.5e-26 123.2 81 74.1
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 1.9e-26 122.9 82 76.8
FAN04G2484 Fragaria x ananassa HOM05D003603 ORTHO05D004186 1.9e-26 122.9 81 72.8
Aa31LG9G15610 Aethionema arabicum HOM05D003603 ORTHO05D004186 2.5e-26 122.5 82 75.6
Thecc.03G312100 Theobroma cacao HOM05D003603 ORTHO05D004186 2.5e-26 122.5 81 71.6
Sabra01G0104400 Salix brachista HOM05D003603 ORTHO05D004186 5.5e-26 121.3 81 72.8
Lj2g0008166 Lotus japonicus HOM05D003603 ORTHO05D004186 7.2e-26 120.9 81 71.6
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 7.2e-26 120.9 81 70.4
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 7.2e-26 120.9 81 74.1
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 1.2e-25 120.2 82 73.2
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 1.6e-25 119.8 81 70.4
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 1.6e-25 119.8 81 70.4
Eucgr.D02636 Eucalyptus grandis HOM05D003603 ORTHO05D004186 1.6e-25 119.8 81 70.4
QL07p005886 Quercus lobata HOM05D003603 ORTHO05D004186 1.6e-25 119.8 84 69.0
QL12p000179 Quercus lobata HOM05D003603 ORTHO05D004186 1.6e-25 119.8 84 69.0
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 2.1e-25 119.4 84 72.6
Manes.15G192766 Manihot esculenta HOM05D003603 ORTHO05D004186 2.7e-25 119.0 81 72.8
Prupe.5G026000 Prunus persica HOM05D003603 ORTHO05D004186 3.6e-25 118.6 81 71.6
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 4.7e-25 118.2 81 70.4
TWI15G1018 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 8.0e-25 117.5 81 69.1
BraA05t19955Z Brassica rapa HOM05D003603 ORTHO05D004186 1.0e-24 117.1 81 69.1
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 1.0e-24 117.1 82 72.0
Glyma.01G010900 Glycine max HOM05D003603 ORTHO05D004186 3.0e-24 115.5 82 69.5
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 3.0e-24 115.5 82 69.5
VMungo1215G0432 Vigna mungo HOM05D003603 ORTHO05D004186 3.0e-24 115.5 82 69.5
A05p10140 Brassica napus HOM05D003603 ORTHO05D004186 5.2e-24 114.8 81 67.9
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 5.2e-24 114.8 83 69.9
MD06G1024900 Malus domestica HOM05D003603 ORTHO05D004186 6.8e-24 114.4 81 70.4
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 6.8e-24 114.4 83 68.7
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 6.8e-24 114.4 82 69.5
Sed0026512 Sechium edule HOM05D003603 ORTHO05D004186 6.8e-24 114.4 81 69.1
TWI81G0448 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 6.8e-24 114.4 82 69.5
Duzib205G1823 Durio zibethinus HOM05D003603 ORTHO05D004186 8.8e-24 114.0 81 65.4
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 1.2e-23 113.6 82 70.7
CSS0011703 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 1.2e-23 113.6 84 70.2
Actinidia01335 Actinidia chinensis HOM05D003603 ORTHO05D004186 2.0e-23 112.8 84 69.0
ClCG10G001200 Citrullus lanatus HOM05D003603 ORTHO05D004186 2.0e-23 112.8 81 66.7
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 2.0e-23 112.8 81 67.9
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 2.6e-23 112.5 85 65.9
Nn3g19353 Nelumbo nucifera HOM05D003603 ORTHO05D004186 4.4e-23 111.7 81 67.9
CANSAT21G0457 Cannabis sativa HOM05D003603 ORTHO05D004186 5.7e-23 111.3 81 70.4
CANSAT56G3990 Cannabis sativa HOM05D003603 ORTHO05D004186 5.7e-23 111.3 81 70.4
TAR375G0833 Trochodendron aralioides HOM05D003603 ORTHO05D004186 5.7e-23 111.3 82 69.5
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 7.5e-23 110.9 83 67.5
CSS0028298 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 9.8e-23 110.5 85 68.2
Ciclev10002760m.g Citrus clementina HOM05D003603 ORTHO05D004186 1.3e-22 110.2 86 67.4
Dinv06911 Davidia involucrata HOM05D003603 ORTHO05D004186 1.3e-22 110.2 84 66.7
CSS0006858 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 1.7e-22 109.8 85 68.2
CiPaw.12G069800 Carya illinoinensis HOM05D003603 ORTHO05D004186 1.7e-22 109.8 81 66.7
Migut.A00590 Erythranthe guttata HOM05D003603 ORTHO05D004186 1.7e-22 109.8 82 72.0
Rhsim07G0134300 Rhododendron simsii HOM05D003603 ORTHO05D004186 2.2e-22 109.4 86 68.6
SGA_v2.0_scaffold96G29046 Striga asiatica HOM05D003603 ORTHO05D004186 2.2e-22 109.4 86 67.4
MELO3C013813.2 Cucumis melo HOM05D003603 ORTHO05D004186 2.8e-22 109.0 87 64.4
MSTRG.1790 Avicennia marina HOM05D003603 ORTHO05D004186 3.7e-22 108.6 86 67.4
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 3.7e-22 108.6 85 64.7
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 4.8e-22 108.2 83 66.3
Rhsim11G0028200 Rhododendron simsii HOM05D003603 ORTHO05D004186 4.8e-22 108.2 81 70.4
Cc08_g03850 Coffea canephora HOM05D003603 ORTHO05D004186 6.3e-22 107.8 84 64.3
Hma1.2p1_0803F.1_g220845 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 6.3e-22 107.8 84 64.3
Hma1.2p1_0803F.1_g220850 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 6.3e-22 107.8 84 64.3
MSTRG.25700 Avicennia marina HOM05D003603 ORTHO05D004186 8.3e-22 107.5 86 65.1
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 8.3e-22 107.5 81 69.1
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 8.3e-22 107.5 81 69.1
Actinidia29278 Actinidia chinensis HOM05D003603 ORTHO05D004186 1.4e-21 106.7 84 65.5
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 1.4e-21 106.7 81 63.0
C04p64400 Brassica napus HOM05D003603 ORTHO05D004186 1.8e-21 106.3 81 70.4
BolC4t27924H Brassica oleracea HOM05D003603 ORTHO05D004186 1.8e-21 106.3 81 70.4
Gorai.003G186200 Gossypium raimondii HOM05D003080 ORTHO05D003601 1.8e-21 106.3 83 65.1
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 1.8e-21 106.3 84 66.7
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 4.1e-21 105.1 83 63.9
CAN.G474.26 Capsicum annuum HOM05D003603 ORTHO05D004186 5.4e-21 104.8 85 63.5
Migut.E01327 Erythranthe guttata HOM05D003603 ORTHO05D004186 5.4e-21 104.8 89 67.4
ECA233G2030 Erigeron canadensis HOM05D003603 ORTHO05D004186 7.0e-21 104.4 84 60.7
Nitab4.5_0000301g0080 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.2e-20 103.6 84 61.9
Peaxi162Scf00052g00329 Petunia axillaris HOM05D003603 ORTHO05D004186 1.2e-20 103.6 84 60.7
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 1.2e-20 103.6 82 61.0
TAR636G1298 Trochodendron aralioides HOM05D003603 ORTHO05D004186 1.6e-20 103.2 81 65.4
Nitab4.5_0005370g0020 Nicotiana tabacum HOM05D003603 ORTHO05D004186 2.0e-20 102.8 84 61.9
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 2.0e-20 102.8 83 65.1
PGSC0003DMG400009296 Solanum tuberosum HOM05D003603 ORTHO05D004186 2.0e-20 102.8 84 61.9
AUR62027323 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.7e-20 102.4 81 63.0
Lj7C124G0 Lonicera japonica HOM05D003603 ORTHO05D004186 2.7e-20 102.4 85 64.7
Hund11105 Selenicereus undatus HOM05D003603 ORTHO05D004186 2.7e-20 102.4 81 60.5
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 3.5e-20 102.1 88 63.6
Solyc08g076180.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 3.5e-20 102.1 84 61.9
Sopen08g024820 Solanum pennellii HOM05D003603 ORTHO05D004186 3.5e-20 102.1 84 61.9
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 5.9e-20 101.3 82 61.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 5.9e-20 101.3 82 61.0
PGSC0003DMG400016765 Solanum tuberosum HOM05D003603 ORTHO05D004186 5.9e-20 101.3 81 64.2
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 7.7e-20 100.9 81 63.0
DCAR_004264 Daucus carota HOM05D003603 ORTHO05D004186 1.0e-19 100.5 83 62.7
DCAR_008204 Daucus carota HOM05D003603 ORTHO05D004186 1.0e-19 100.5 84 61.9
Solyc06g066290.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 1.3e-19 100.1 81 64.2
Sopen06g021730 Solanum pennellii HOM05D003603 ORTHO05D004186 1.3e-19 100.1 81 63.0
Gorai.007G033700 Gossypium raimondii HOM05D003603 ORTHO05D004186 1.7e-19 99.8 81 64.2
Aqoxy3G02143 Aquilegia oxysepala HOM05D003603 ORTHO05D004186 2.9e-19 99.0 82 61.0
Psat2g140080 Pisum sativum HOM05D003603 ORTHO05D004186 2.9e-19 99.0 86 59.3
Gohir.A11G028400 Gossypium hirsutum HOM05D003603 ORTHO05D004186 3.8e-19 98.6 81 63.0
Gohir.D11G030800 Gossypium hirsutum HOM05D003603 ORTHO05D004186 3.8e-19 98.6 81 63.0
HanXRQChr03g0082031 Helianthus annuus HOM05D003603 ORTHO05D004186 3.8e-19 98.6 84 59.5
Peaxi162Scf00045g00444 Petunia axillaris HOM05D003603 ORTHO05D004186 3.8e-19 98.6 85 62.4
Ah.12g055980 Amaranthus hybridus HOM05D003603 ORTHO05D004186 5.0e-19 98.2 81 59.3
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 5.0e-19 98.2 81 56.8
SalBow8G3962 Salvia bowleyana HOM05D003603 ORTHO05D004186 5.0e-19 98.2 84 65.5
HanXRQChr13g0404821 Helianthus annuus HOM05D003603 ORTHO05D004186 3.3e-18 95.5 85 60.0
BcaB07g32857 Brassica carinata HOM05D003603 ORTHO05D004186 5.5e-18 94.7 81 64.2
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 5.5e-18 94.7 81 58.0
SGA_v2.0_scaffold111G31383 Striga asiatica HOM05D003603 ORTHO05D004186 2.8e-17 92.4 81 56.8
Lsat_1_v5_gn_6_17681 Lactuca sativa HOM05D003603 ORTHO05D004186 8.0e-17 90.9 70 61.4
Manes.17G016002 Manihot esculenta HOM05D003603 ORTHO05D004186 1.4e-16 90.1 60 70.0
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 2.3e-16 89.4 81 51.9
unitig_32.g11622 Utricularia gibba HOM05D003603 ORTHO05D004186 2.3e-16 89.4 81 59.3
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 3.0e-16 89.0 57 70.2
CsaV3_3G001240 Cucumis sativus L. HOM05D003603 ORTHO05D004186 5.2e-16 88.2 59 69.5
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 6.8e-16 87.8 81 50.6
Os02g0697700 Oryza sativa ssp. japonica HOM05D003603 ORTHO05D004186 1.5e-15 86.7 83 54.2
Oeu017100.1 Olea europaea HOM05D003603 ORTHO05D004186 2.6e-15 85.9 59 69.5
BolC4t22900H Brassica oleracea HOM05D003603 ORTHO05D004186 3.4e-15 85.5 78 59.0
Oeu027879.1 Olea europaea HOM05D003603 ORTHO05D004186 7.5e-15 84.3 67 64.2
Zm00001eb251500 Zea mays HOM05D003603 ORTHO05D004186 7.5e-15 84.3 84 51.2
Cfa012536 Carpinus fangiana HOM05D003603 ORTHO05D004186 9.8e-15 84.0 62 62.9
Peaxi162Scf00185g01122 Petunia axillaris HOM05D003603 ORTHO05D004186 1.7e-14 83.2 59 62.7
vmacro00238 Vaccinium macrocarpon HOM05D003603 ORTHO05D004186 2.8e-14 82.4 61 67.2
Dinv29021 Davidia involucrata HOM05D003603 ORTHO05D004186 3.2e-13 79.0 62 62.9
HPP92_014701 Vanilla planifolia HOM05D003603 ORTHO05D004186 3.2e-13 79.0 81 53.1
Lj8A318T46 Lonicera japonica HOM05D003603 ORTHO05D004186 7.0e-13 77.8 62 62.9
Hma1.2p1_1819F.1_g304070 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 9.2e-13 77.4 60 65.0
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 5.9e-12 74.7 127 37.8
BcaNung07274 Brassica carinata HOM05D003603 ORTHO05D004186 1.0e-11 73.9 51 70.6
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 1.3e-11 73.6 83 44.6
HPP92_005441 Vanilla planifolia HOM05D003603 ORTHO05D004186 1.3e-11 73.6 82 47.6
AUR62007409 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.7e-11 73.2 60 58.3
SalBow1G3570 Salvia bowleyana HOM05D003603 ORTHO05D004186 1.7e-11 73.2 48 68.8
SalBow1G4269 Salvia bowleyana HOM05D003603 ORTHO05D004186 1.7e-11 73.2 48 68.8
EL10Ac5g11930 Beta vulgaris HOM05D003603 ORTHO05D004186 2.3e-11 72.8 58 56.9
Nitab4.5_0001632g0070 Nicotiana tabacum HOM05D003603 ORTHO05D004186 2.9e-11 72.4 62 58.1
Ah.07g201360 Amaranthus hybridus HOM05D003603 ORTHO05D004186 5.0e-11 71.6 60 53.3
VMungo1383G2097 Vigna mungo HOM05D003603 ORTHO05D004186 8.6e-11 70.9 57 59.6
Hund14334 Selenicereus undatus HOM05D003603 ORTHO05D004186 1.1e-10 70.5 58 58.6
THA.LOC104814407 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 2.5e-10 69.3 82 50.0
Nitab4.5_0002429g0050 Nicotiana tabacum HOM05D003603 ORTHO05D004186 4.3e-10 68.6 63 57.1
MBI13_g04781_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 7.3e-10 67.8 37 73.0
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 2.8e-09 65.9 91 40.7
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 6.1e-09 64.7 43 65.1
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 6.8e-08 61.2 92 38.0
MBI05_g12773_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 3.4e-07 58.9 37 64.9
HPP92_005435 Vanilla planifolia HOM05D003603 ORTHO05D004186 4.4e-07 58.5 82 39.0
BcaC02g11672 Brassica carinata HOM05D003603 ORTHO05D004186 2.2e-06 56.2 58 50.0
BcaC02g11674 Brassica carinata HOM05D003603 ORTHO05D004186 2.2e-06 56.2 58 50.0
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 3.7e-06 55.5 35 54.3
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 4.9e-06 55.1 81 39.5
MBI19_g01917_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D009830 4.9e-06 55.1 56 42.9
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 6.4e-06 54.7 87 33.3
HPP92_009019 Vanilla planifolia HOM05D003603 ORTHO05D004186 8.3e-06 54.3 80 43.8
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 8.3e-06 54.3 69 43.5


User provided reference genes

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