Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.2e-107 391.7 196 100.0
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 2.0e-96 355.9 196 89.3
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 6.3e-95 350.9 196 88.8
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.6e-82 309.7 195 80.5
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.2e-80 303.5 196 77.0
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.7e-79 299.7 196 77.0
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.0e-76 288.9 198 76.8
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.0e-76 288.9 198 76.8
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 5.0e-76 288.1 198 74.7
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 5.0e-76 288.1 198 74.7
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 5.0e-76 288.1 198 74.7
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.7e-71 271.9 196 71.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 3.2e-70 268.9 197 70.6
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.0e-64 249.6 201 66.7
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.0e-64 249.6 202 63.9
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.9e-63 245.7 201 63.7
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.1e-62 241.9 201 62.2
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 4.6e-61 238.4 199 63.8
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 6.0e-61 238.0 203 63.1
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.9e-60 235.3 202 63.4
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 5.1e-60 235.0 196 61.7
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 5.1e-60 235.0 196 61.7
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 3.3e-59 232.3 196 61.2
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-58 229.6 196 60.2
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 4.7e-58 228.4 197 60.4
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 4.7e-58 228.4 197 60.4
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 6.4e-55 218.0 201 57.2
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.1e-51 207.2 202 54.0
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 3.3e-51 205.7 202 53.5
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 9.6e-51 204.1 198 53.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-50 203.4 198 52.5
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 2.8e-50 202.6 198 52.0
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.2e-50 201.4 199 53.8
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.2e-50 201.4 199 53.8
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 6.2e-50 201.4 201 51.7
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 8.1e-50 201.1 199 53.8
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.8e-49 199.9 199 53.3
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 4.0e-49 198.7 194 52.1
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.3e-49 198.4 199 53.3
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 6.9e-49 198.0 199 53.3
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-48 196.4 199 52.3
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.6e-48 196.1 200 52.5
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 4.4e-48 195.3 198 49.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 7.6e-48 194.5 200 51.5
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.6e-48 194.5 206 51.9
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 9.9e-48 194.1 199 52.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.2e-47 193.0 196 50.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 2.9e-47 192.6 200 52.0
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 4.9e-47 191.8 203 49.3
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 4.9e-47 191.8 196 50.5
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 4.2e-46 188.7 198 51.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.6e-45 185.3 203 51.2
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.3e-44 183.7 200 47.0
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.7e-44 183.3 203 51.2
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.7e-44 183.3 204 48.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 5.1e-44 181.8 202 50.5
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-43 180.6 205 49.3
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.1e-42 176.4 197 49.2
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 3.6e-42 175.6 215 47.0
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 6.2e-42 174.9 203 47.8
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 8.1e-42 174.5 204 48.0
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 8.1e-42 174.5 197 48.7
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 8.1e-42 174.5 197 46.7
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.1e-41 174.1 202 48.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 2.4e-41 172.9 193 47.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 3.1e-41 172.6 200 48.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 4.0e-41 172.2 196 49.5
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 4.0e-41 172.2 202 47.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 4.0e-41 172.2 200 45.5
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.2e-40 170.6 194 50.5
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.0e-40 169.9 203 45.8
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 4.5e-40 168.7 193 48.2
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 5.8e-40 168.3 198 48.5
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 7.6e-40 167.9 205 47.3
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.6e-40 167.9 203 44.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 9.9e-40 167.5 185 48.1
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 9.9e-40 167.5 195 44.6
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.3e-39 167.2 193 48.2
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.2e-39 166.4 202 46.0
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.2e-39 166.4 200 48.5
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.2e-39 166.4 200 48.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.9e-39 166.0 195 46.7
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.9e-39 166.0 197 47.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 3.8e-39 165.6 205 47.3
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 3.8e-39 165.6 196 45.9
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 3.8e-39 165.6 197 48.7
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 3.8e-39 165.6 197 48.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 4.9e-39 165.2 201 46.8
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 6.4e-39 164.9 195 47.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 8.4e-39 164.5 201 46.3
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-38 164.1 200 47.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-38 164.1 200 47.0
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.9e-38 163.3 195 47.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.4e-38 162.9 194 46.9
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.2e-38 162.2 199 45.2
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 5.4e-38 161.8 195 44.1
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 7.1e-38 161.4 197 45.2
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 7.1e-38 161.4 197 45.2
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 9.3e-38 161.0 198 44.9
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 9.3e-38 161.0 199 44.2
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.2e-37 160.6 203 45.3
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 6.0e-37 158.3 216 44.0
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 7.9e-37 157.9 197 45.2
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 7.9e-37 157.9 195 45.1
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 7.9e-37 157.9 190 44.7
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.3e-36 157.1 203 44.3
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.3e-36 157.1 198 44.4
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.8e-36 156.8 193 46.6
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.3e-36 156.4 208 44.2
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.1e-35 154.1 203 46.3
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.1e-35 154.1 198 45.5
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.5e-35 153.7 203 45.8
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.5e-35 153.7 209 45.0
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.9e-35 153.3 198 43.9
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 4.3e-35 152.1 198 43.9
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 5.6e-35 151.8 199 45.2
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 9.6e-35 151.0 153 52.9
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 9.6e-35 151.0 196 42.9
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.3e-34 150.6 199 45.2
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.6e-34 150.2 195 43.6
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 2.8e-34 149.4 222 40.1
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.8e-34 148.7 185 45.4
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 6.2e-34 148.3 202 43.1
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-33 147.1 217 43.3
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.4e-33 146.4 271 36.2
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 4.0e-33 145.6 207 41.5
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.3e-33 145.2 196 43.9
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 2.0e-32 143.3 212 38.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.0e-32 143.3 197 42.1
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 4.5e-32 142.1 106 67.0
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 5.8e-32 141.7 262 36.6
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.6e-32 141.4 96 67.7
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.9e-31 139.4 197 40.1
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 6.4e-31 138.3 196 39.8
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 8.4e-31 137.9 153 49.7
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 5.5e-30 135.2 200 42.5
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.6e-29 133.7 88 69.3
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 3.5e-29 132.5 202 41.6
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.0e-28 131.0 197 40.6
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 3.0e-28 129.4 326 31.9
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.5e-27 127.1 127 48.8
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.5e-27 127.1 130 51.5
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 9.6e-27 124.4 97 68.0
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 9.6e-27 124.4 97 68.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.1e-26 123.2 115 51.3
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-25 120.6 97 67.0
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 1.4e-25 120.6 97 67.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.6e-24 116.3 186 41.4
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.4e-24 115.9 88 59.1
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 4.5e-24 115.5 88 60.2
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.3e-23 114.0 151 46.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.7e-23 113.6 196 35.7
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.7e-23 113.6 178 40.4
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 8.4e-23 111.3 120 54.2
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.9e-22 110.2 103 54.4
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 7.1e-22 108.2 76 72.4
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.3e-20 103.2 154 39.6
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.9e-19 100.1 168 39.9
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 2.5e-19 99.8 158 38.6
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 3.1e-17 92.8 150 38.7
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.9e-15 86.3 160 39.4
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.1e-14 84.3 136 39.0
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 3.6e-13 79.3 54 70.4
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 4.6e-13 79.0 73 56.2
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 6.1e-13 78.6 154 37.0
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.8e-10 68.9 44 65.9
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.8e-10 68.9 44 65.9
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 6.3e-10 68.6 39 76.9
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.1e-09 67.8 95 41.1
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.8e-09 67.0 44 61.4
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 6.9e-09 65.1 197 31.0
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 3.4e-08 62.8 84 42.9
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.5e-06 55.5 123 35.8


User provided reference genes

Program Settings