Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35470 Arabidopsis thaliana HOM05D006211 ORTHO05D007202 1.6e-86 322.8 168 100.0
AL4G31520 Arabidopsis lyrata HOM05D006211 ORTHO05D007202 5.1e-77 291.2 168 91.7
Thhalv10017330m.g Eutrema salsugineum HOM05D006211 ORTHO05D007202 5.5e-71 271.2 171 86.0
CARHR129620 Cardamine hirsuta HOM05D006211 ORTHO05D007202 9.3e-71 270.4 169 86.4
Carub.0004s1716 Capsella rubella HOM05D006211 ORTHO05D007202 1.6e-70 269.6 171 83.6
Aa31LG9G15460 Aethionema arabicum HOM05D006211 ORTHO05D007202 3.7e-59 231.9 173 75.1
BcaB02g09427 Brassica carinata HOM05D006211 ORTHO05D007202 1.0e-53 213.8 173 72.3
THA.LOC104814422 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 1.8e-53 213.0 170 68.8
A05p10260 Brassica napus HOM05D006211 ORTHO05D007202 2.3e-53 212.6 172 73.8
BraA05t19966Z Brassica rapa HOM05D006211 ORTHO05D007202 2.3e-53 212.6 172 73.8
BcaC02g11652 Brassica carinata HOM05D006211 ORTHO05D007202 8.8e-53 210.7 172 71.5
BolC4t22919H Brassica oleracea HOM05D006211 ORTHO05D007202 8.8e-53 210.7 172 71.5
Sp4g17690 Schrenkiella parvula HOM05D006211 ORTHO05D007202 2.5e-52 209.1 171 70.8
THA.LOC104798487 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 2.8e-51 205.7 171 67.8
BcaB06g28843 Brassica carinata HOM05D006211 ORTHO05D007202 8.8e-45 184.1 175 64.6
BolC4t27918H Brassica oleracea HOM05D006211 ORTHO05D007202 1.7e-43 179.9 173 65.9
BcaC02g07713 Brassica carinata HOM05D006211 ORTHO05D007202 4.8e-43 178.3 173 65.3
BraA04t18191Z Brassica rapa HOM05D006211 ORTHO05D007202 2.6e-36 156.0 170 59.4
C04p12710 Brassica napus HOM05D006211 ORTHO05D007202 1.4e-34 150.2 191 53.9
A04p26920 Brassica napus HOM05D006211 ORTHO05D007202 5.9e-33 144.8 192 52.1
C04p64310 Brassica napus HOM05D006211 ORTHO05D007202 5.9e-33 144.8 192 52.1
Cpa.g.sc90.12 Carica papaya HOM05D006211 ORTHO05D007202 8.3e-27 124.4 173 50.3
CANSAT21G1179 Cannabis sativa HOM05D006211 ORTHO05D007202 1.4e-26 123.6 176 47.2
COL.COLO4_16960 Corchorus olitorius HOM05D006211 ORTHO05D007202 4.1e-26 122.1 173 46.8
Sabra03G0064400 Salix brachista HOM05D006211 ORTHO05D007202 5.9e-25 118.2 176 47.7
Duzib205G0699 Durio zibethinus HOM05D006211 ORTHO05D007202 1.3e-24 117.1 176 46.6
Haze_08174 Corylus avellana HOM05D006211 ORTHO05D007202 3.8e-24 115.5 172 47.1
Potri.003G095500 Populus trichocarpa HOM05D006211 ORTHO05D007202 8.5e-24 114.4 176 46.0
Cfa012495 Carpinus fangiana HOM05D006211 ORTHO05D007202 1.1e-23 114.0 170 47.6
Thecc.03G308400 Theobroma cacao HOM05D006211 ORTHO05D007202 1.5e-23 113.6 175 44.6
TWI81G0656 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 3.2e-23 112.5 170 48.8
Gorai.004G183000 Gossypium raimondii HOM05D006211 ORTHO05D007202 9.4e-23 110.9 169 43.8
CiPaw.12G067200 Carya illinoinensis HOM05D006211 ORTHO05D007202 1.6e-22 110.2 171 46.8
TWI60G1252 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 1.6e-22 110.2 170 48.8
Duzib084G0219 Durio zibethinus HOM05D006211 ORTHO05D007202 2.1e-22 109.8 175 44.0
Gohir.A08G154500 Gossypium hirsutum HOM05D006211 ORTHO05D007202 2.7e-22 109.4 169 43.8
ClCG09G011720 Citrullus lanatus HOM05D006211 ORTHO05D007202 3.6e-22 109.0 169 47.9
Sed0013517 Sechium edule HOM05D006211 ORTHO05D007202 4.7e-22 108.6 169 47.3
CiPaw.11G097200 Carya illinoinensis HOM05D006211 ORTHO05D007202 1.4e-21 107.1 168 45.2
Gohir.D08G175100 Gossypium hirsutum HOM05D006211 ORTHO05D007202 1.4e-21 107.1 167 43.1
Potri.001G138300 Populus trichocarpa HOM05D006211 ORTHO05D007202 1.4e-21 107.1 169 46.2
RcHm_v2.0_Chr7g0211581 Rosa chinensis HOM05D006211 ORTHO05D007202 1.4e-21 107.1 177 49.7
Prupe.5G029800 Prunus persica HOM05D006211 ORTHO05D007202 2.3e-21 106.3 181 47.0
QL12p001245 Quercus lobata HOM05D006211 ORTHO05D007202 2.3e-21 106.3 172 45.9
Hma1.2p1_1594F.1_g292720 Hydrangea macrophylla HOM05D006211 ORTHO05D007202 2.6e-20 102.8 171 44.4
Ciclev10002672m.g Citrus clementina HOM05D006211 ORTHO05D007202 5.7e-20 101.7 182 41.2
MD06G1025300 Malus domestica HOM05D006211 ORTHO05D007202 7.5e-20 101.3 186 43.0
Sabra01G0107000 Salix brachista HOM05D006211 ORTHO05D007202 9.8e-20 100.9 168 45.8
Atru.chr6.1617 Acer truncatum HOM05D006211 ORTHO05D007202 2.8e-19 99.4 173 42.8
Gohir.D03G175400 Gossypium hirsutum HOM05D006211 ORTHO05D007202 2.8e-19 99.4 171 42.1
Gorai.003G184400 Gossypium raimondii HOM05D006211 ORTHO05D007202 2.8e-19 99.4 171 42.1
MD16G1281100 Malus domestica HOM05D006211 ORTHO05D007202 2.8e-19 99.4 188 44.1
Manes.17G010400 Manihot esculenta HOM05D006211 ORTHO05D007202 3.7e-19 99.0 175 43.4
FvH4_5g22880 Fragaria vesca HOM05D006211 ORTHO05D007202 4.9e-19 98.6 177 46.3
FAN18G2302 Fragaria x ananassa HOM05D006211 ORTHO05D007202 4.9e-19 98.6 177 46.3
FAN08G1932 Fragaria x ananassa HOM05D006211 ORTHO05D007202 8.3e-19 97.8 173 45.7
FAN18G0589 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.4e-18 97.1 177 45.8
PGR042G2947 Punica granatum HOM05D006211 ORTHO05D007202 1.4e-18 97.1 161 42.9
FAN04G1558 Fragaria x ananassa HOM05D006211 ORTHO05D007202 4.5e-17 92.0 177 42.9
Rhsim11G0019700 Rhododendron simsii HOM05D006211 ORTHO05D007202 1.0e-16 90.9 176 41.5
Dinv28989 Davidia involucrata HOM05D006211 ORTHO05D007202 2.9e-16 89.4 171 41.5
Nn1g00185 Nelumbo nucifera HOM05D006211 ORTHO05D007202 2.9e-16 89.4 171 42.1
Dinv25246 Davidia involucrata HOM05D006211 ORTHO05D007202 8.6e-16 87.8 172 40.1
vmacro00294 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 1.9e-15 86.7 169 43.2
Lj8A306T66 Lonicera japonica HOM05D006211 ORTHO05D007202 2.5e-15 86.3 175 38.9
Hund14362 Selenicereus undatus HOM05D006211 ORTHO05D007202 3.3e-15 85.9 172 41.9
FAN13G1488 Fragaria x ananassa HOM05D006211 ORTHO05D007202 4.3e-15 85.5 179 41.3
MELO3C003431.2 Cucumis melo HOM05D006211 ORTHO05D007202 1.2e-14 84.0 170 40.6
vmacro00301 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 1.2e-14 84.0 169 42.6
Actinidia03352 Actinidia chinensis HOM05D006211 ORTHO05D007202 4.7e-14 82.0 149 43.0
EL10Ac5g12029 Beta vulgaris HOM05D006211 ORTHO05D007202 1.0e-13 80.9 175 43.4
AUR62018657 Chenopodium quinoa HOM05D006211 ORTHO05D007202 1.0e-13 80.9 151 42.4
Sc22g0001800 Simmondsia chinensis HOM05D006211 ORTHO05D007202 1.4e-13 80.5 171 37.4
Sopen08g025100 Solanum pennellii HOM05D006211 ORTHO05D007202 1.2e-12 77.4 182 36.3
Solyc08g076520.3 Solanum lycopersicum HOM05D006211 ORTHO05D007202 1.5e-12 77.0 182 36.3
Sed0017013 Sechium edule HOM05D006211 ORTHO05D007202 2.6e-12 76.3 173 43.4
VMungo1215G0299 Vigna mungo HOM05D006211 ORTHO05D007202 2.6e-12 76.3 142 41.5
Nitab4.5_0000127g0020 Nicotiana tabacum HOM05D006211 ORTHO05D007202 3.4e-12 75.9 178 37.6
PGSC0003DMG400014798 Solanum tuberosum HOM05D006211 ORTHO05D007202 3.4e-12 75.9 183 37.2
Peaxi162Scf00170g00822 Petunia axillaris HOM05D006211 ORTHO05D007202 4.4e-12 75.5 170 40.6
Actinidia06373 Actinidia chinensis HOM05D006211 ORTHO05D007202 7.5e-12 74.7 119 39.5
Phvul.002G138000 Phaseolus vulgaris HOM05D006211 ORTHO05D007202 1.3e-11 73.9 142 40.8
Ah.12g055390 Amaranthus hybridus HOM05D006211 ORTHO05D007202 1.7e-11 73.6 173 36.4
Eucgr.E00236 Eucalyptus grandis HOM05D006211 ORTHO05D007202 2.2e-11 73.2 101 44.6
Nitab4.5_0000529g0100 Nicotiana tabacum HOM05D006211 ORTHO05D007202 2.2e-11 73.2 98 45.9
TAR375G0881 Trochodendron aralioides HOM05D006211 ORTHO05D007202 3.7e-11 72.4 149 38.9
Glyma.01G015400 Glycine max HOM05D006211 ORTHO05D007202 4.9e-11 72.0 141 42.6
HanXRQChr02g0049381 Helianthus annuus HOM05D006211 ORTHO05D007202 4.9e-11 72.0 147 37.4
MSTRG.1998 Avicennia marina HOM05D006211 ORTHO05D007202 1.1e-10 70.9 170 35.3
Gohir.A03G000042 Gossypium hirsutum HOM05D006211 ORTHO05D007202 2.4e-10 69.7 168 36.3
Nn3g19409 Nelumbo nucifera HOM05D006211 ORTHO05D007202 4.1e-10 68.9 113 38.9
arahy.Tifrunner.gnm1.ann1.Q6MSMD Arachis hypogaea HOM05D006211 ORTHO05D007202 9.2e-10 67.8 172 36.6
arahy.Tifrunner.gnm1.ann1.USP5IX Arachis hypogaea HOM05D006211 ORTHO05D007202 9.2e-10 67.8 172 36.6
Medtr5g029620 Medicago truncatula HOM05D006211 ORTHO05D007202 9.2e-10 67.8 174 36.2
Lsat_1_v5_gn_6_3501 Lactuca sativa HOM05D006211 ORTHO05D007202 1.2e-09 67.4 163 39.3
Lj2g0003916 Lotus japonicus HOM05D006211 ORTHO05D007202 1.6e-09 67.0 170 37.1
Oeu019228.1 Olea europaea HOM05D006211 ORTHO05D007202 1.6e-09 67.0 99 47.5
Oeu028870.1 Olea europaea HOM05D006211 ORTHO05D007202 1.6e-09 67.0 99 47.5
Glyma.09G207000 Glycine max HOM05D006211 ORTHO05D007202 2.0e-09 66.6 142 38.7
Aqoxy3G02212 Aquilegia oxysepala HOM05D006211 ORTHO05D007202 3.5e-09 65.9 102 44.1
Hund11197 Selenicereus undatus HOM05D006211 ORTHO05D007202 3.5e-09 65.9 147 34.7
TPR.G8109 Trifolium pratense HOM05D006211 ORTHO05D007202 3.5e-09 65.9 168 36.9
HanXRQChr13g0394911 Helianthus annuus HOM05D006211 ORTHO05D007202 4.6e-09 65.5 170 36.5
ECA233G1983 Erigeron canadensis HOM05D006211 ORTHO05D007202 5.9e-09 65.1 155 37.4
DCAR_008238 Daucus carota HOM05D006211 ORTHO05D007202 1.0e-08 64.3 174 38.5
Actinidia17894 Actinidia chinensis HOM05D006211 ORTHO05D007202 2.3e-08 63.2 109 40.4
Ca_25191_v3 Cicer arietinum L. HOM05D006211 ORTHO05D007202 2.3e-08 63.2 117 43.6
GSVIVG01013097001 Vitis vinifera HOM05D006211 ORTHO05D007202 3.9e-08 62.4 85 45.9
Cc08_g03420 Coffea canephora HOM05D006211 ORTHO05D007202 5.0e-08 62.0 105 42.9
Migut.E00776 Erythranthe guttata HOM05D006211 ORTHO05D007202 1.1e-07 60.8 93 39.8
SGA_v2.0_scaffold20G09263 Striga asiatica HOM05D006211 ORTHO05D007202 3.3e-07 59.3 169 34.9
Actinidia17897 Actinidia chinensis HOM05D006211 ORTHO05D007202 4.3e-07 58.9 113 37.2
Lalb_Chr09g0325551 Lupinus albus HOM05D006211 ORTHO05D007202 7.3e-07 58.2 168 33.3
MSTRG.13745 Avicennia marina HOM05D006211 ORTHO05D007202 6.2e-06 55.1 108 37.0
PSO782G5418 Papaver somniferum HOM05D006211 ORTHO05D007202 6.2e-06 55.1 104 41.3
Lalb_Chr05g0215821 Lupinus albus HOM05D006211 ORTHO05D007202 8.0e-06 54.7 136 33.8


User provided reference genes

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