Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 7.0e-122 440.7 226 100.0
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 6.6e-112 407.5 227 92.1
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 1.4e-109 399.8 226 88.9
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 2.4e-106 389.0 226 87.2
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 3.2e-106 388.7 226 88.1
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 6.0e-105 384.4 228 88.6
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 2.0e-100 369.4 225 80.4
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 5.8e-100 367.9 218 85.8
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 1.3e-99 366.7 211 87.7
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 1.3e-99 366.7 211 87.7
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 1.3e-99 366.7 211 87.7
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 2.9e-99 365.5 218 83.5
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 8.3e-99 364.0 216 85.2
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 6.4e-91 337.8 226 73.5
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 1.2e-76 290.4 217 65.0
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 8.4e-75 284.3 209 66.0
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 3.2e-74 282.3 204 66.2
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 5.4e-74 281.6 217 63.1
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 7.1e-74 281.2 217 65.4
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.2e-73 280.4 209 65.6
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 1.2e-73 280.4 235 61.7
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 2.1e-73 279.6 223 63.2
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 2.1e-73 279.6 231 63.6
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 2.7e-73 279.3 220 63.6
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 4.6e-73 278.5 225 62.2
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 6.0e-73 278.1 225 62.2
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 1.3e-72 276.9 218 64.7
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 1.7e-72 276.6 214 63.1
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 1.7e-72 276.6 209 65.1
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 3.0e-72 275.8 211 64.9
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 3.0e-72 275.8 221 60.6
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 8.7e-72 274.2 209 64.6
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 8.7e-72 274.2 214 64.0
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 1.1e-71 273.9 212 66.0
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.5e-71 272.7 225 61.3
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 3.3e-71 272.3 220 61.8
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 4.3e-71 271.9 209 63.6
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 1.3e-70 270.4 225 62.2
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 1.6e-70 270.0 223 62.8
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 2.1e-70 269.6 221 61.1
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 2.1e-70 269.6 211 60.2
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 2.1e-70 269.6 209 63.6
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 4.8e-70 268.5 221 61.5
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 6.2e-70 268.1 212 62.7
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 6.2e-70 268.1 228 61.0
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 6.2e-70 268.1 211 63.0
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 8.1e-70 267.7 230 58.3
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 8.1e-70 267.7 217 62.7
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 8.1e-70 267.7 220 62.7
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 1.1e-69 267.3 220 60.9
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 1.4e-69 266.9 209 63.2
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 1.8e-69 266.5 221 62.0
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 4.0e-69 265.4 209 62.7
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 5.3e-69 265.0 224 61.6
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 6.9e-69 264.6 209 62.7
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 9.0e-69 264.2 221 59.3
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 9.0e-69 264.2 218 62.4
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 9.0e-69 264.2 230 57.8
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.2e-68 263.8 212 63.7
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 2.0e-68 263.1 284 51.8
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 3.4e-68 262.3 211 62.6
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 9.9e-68 260.8 226 58.4
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 2.2e-67 259.6 233 59.2
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 6.4e-67 258.1 229 57.6
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 1.4e-66 256.9 220 61.4
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 1.4e-66 256.9 224 56.7
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 1.9e-66 256.5 229 57.2
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 1.9e-66 256.5 224 57.6
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 3.2e-66 255.8 218 57.3
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 3.2e-66 255.8 224 56.2
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 3.2e-66 255.8 223 58.3
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 5.5e-66 255.0 214 57.9
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 7.1e-66 254.6 223 55.2
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 2.1e-65 253.1 220 57.7
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 2.7e-65 252.7 225 56.9
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 7.9e-65 251.1 211 60.2
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 1.0e-64 250.8 211 57.3
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 2.3e-64 249.6 211 59.7
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 1.1e-63 247.3 215 54.4
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 1.5e-63 246.9 224 55.4
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 1.9e-63 246.5 222 55.9
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 2.5e-63 246.1 220 55.9
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 7.4e-63 244.6 212 56.6
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 1.3e-62 243.8 212 56.1
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 2.1e-62 243.0 216 55.6
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 4.8e-62 241.9 222 53.2
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 4.8e-62 241.9 216 55.6
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 1.8e-61 240.0 223 58.7
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 2.4e-61 239.6 222 55.4
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 4.0e-61 238.8 211 54.5
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 9.0e-61 237.7 217 54.4
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 9.0e-61 237.7 211 56.9
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 2.6e-60 236.1 278 49.3
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 3.4e-60 235.7 211 55.9
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 4.5e-60 235.3 211 55.9
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 7.6e-60 234.6 211 55.9
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 1.0e-59 234.2 214 57.5
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 3.9e-56 222.2 155 68.4
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 5.1e-56 221.9 209 48.8
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 2.5e-55 219.5 189 55.0
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 2.1e-54 216.5 142 72.5
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 4.8e-54 215.3 209 53.6
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 6.5e-51 204.9 151 66.2
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 8.4e-51 204.5 143 67.1
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 4.6e-49 198.7 213 48.8
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 8.7e-48 194.5 211 51.2
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 1.5e-47 193.7 143 66.4
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 3.7e-46 189.1 141 65.2
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 2.8e-38 162.9 114 66.7
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 2.8e-38 162.9 114 64.9
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 5.3e-37 158.7 213 43.7
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 2.4e-29 133.3 191 40.8
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 6.8e-16 88.6 224 31.7
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 4.5e-12 75.9 102 38.2
MCO13G047 Micromonas commoda HOM05D006861 ORTHO05D008620 1.8e-08 63.9 211 24.6
Gohir.A01G114301 Gossypium hirsutum HOM05D006861 ORTHO05D008620 5.7e-07 58.9 62 53.2


User provided reference genes

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