Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.3e-146 523.1 265 100.0
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.9e-110 402.9 286 77.3
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.4e-105 386.7 303 72.3
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 2.4e-105 386.0 286 73.1
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 9.1e-105 384.0 286 73.1
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 3.8e-103 378.6 286 71.7
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 3.8e-103 378.6 286 71.7
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 6.6e-95 351.3 288 68.4
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.5e-86 323.6 265 65.7
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.6e-85 320.1 286 64.3
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.7e-82 308.9 273 64.5
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 4.3e-78 295.4 354 50.6
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 8.0e-77 291.2 284 55.3
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.1e-76 290.8 286 55.2
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 6.8e-76 288.1 286 55.2
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.5e-75 287.0 284 56.0
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 4.4e-75 285.4 284 54.9
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.3e-74 283.9 286 53.1
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 2.2e-74 283.1 286 55.6
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.9e-74 282.7 283 54.4
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 4.9e-74 282.0 283 53.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 6.4e-74 281.6 258 57.0
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 6.4e-74 281.6 286 53.8
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.1e-73 280.8 287 56.4
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.4e-73 280.4 283 55.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 7.0e-73 278.1 283 54.8
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 9.2e-73 277.7 283 55.1
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-72 277.3 301 51.2
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.1e-72 276.6 287 54.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 3.5e-72 275.8 286 54.2
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 6.0e-72 275.0 290 54.1
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 7.8e-72 274.6 286 51.4
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.5e-70 270.4 286 53.1
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 5.6e-70 268.5 286 50.7
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.1e-69 266.5 286 50.3
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 1.4e-68 263.8 286 51.0
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.8e-68 263.5 145 91.0
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.3e-68 263.1 302 48.7
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 3.1e-68 262.7 285 50.2
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.5e-67 260.4 286 51.7
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 2.0e-67 260.0 283 52.3
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 3.4e-67 259.2 285 50.9
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 4.4e-67 258.8 286 51.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 7.5e-67 258.1 271 49.8
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.3e-66 257.3 286 51.0
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 1.7e-66 256.9 283 49.1
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.7e-66 256.9 286 49.0
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 4.9e-66 255.4 286 49.0
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 6.4e-66 255.0 287 51.6
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 1.1e-65 254.2 283 51.2
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 1.9e-65 253.4 282 51.4
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 2.4e-65 253.1 286 48.3
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.2e-65 252.7 303 48.2
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 7.1e-65 251.5 285 50.9
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 9.2e-65 251.1 283 50.9
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 9.2e-65 251.1 285 48.1
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.0e-64 248.4 283 50.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 1.3e-63 247.3 285 49.5
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.7e-63 246.9 287 48.8
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-63 246.9 289 48.8
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 5.1e-63 245.4 283 50.9
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 5.1e-63 245.4 286 48.3
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 5.1e-63 245.4 286 50.3
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 7.3e-62 241.5 282 47.2
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 9.5e-62 241.1 283 48.8
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 3.6e-61 239.2 280 46.8
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 4.7e-61 238.8 283 48.1
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.4e-60 237.3 307 46.6
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 6.8e-60 235.0 289 46.4
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-59 233.8 267 48.7
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 5.8e-59 231.9 268 49.6
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 7.6e-59 231.5 289 46.4
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 3.2e-57 226.1 257 49.8
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 3.5e-56 222.6 318 43.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 3.0e-55 219.5 245 54.3
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 8.7e-55 218.0 261 48.7
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 7.3e-54 214.9 283 42.8
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 3.6e-53 212.6 291 44.0
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 8.1e-53 211.5 282 46.8
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 2.4e-52 209.9 291 41.9
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 9.0e-52 208.0 260 44.6
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 9.9e-51 204.5 258 45.7
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.5e-48 196.1 202 50.5
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.7e-47 193.7 257 45.9
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 5.1e-47 192.2 281 40.9
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 5.1e-47 192.2 231 48.1
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 1.1e-46 191.0 181 50.3
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 3.3e-46 189.5 118 83.1
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 4.3e-46 189.1 201 51.2
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-45 187.6 223 48.4
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 3.1e-44 183.0 145 65.5
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 6.9e-44 181.8 282 38.3
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 7.6e-43 178.3 295 38.3
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 1.7e-42 177.2 199 46.2
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 8.4e-42 174.9 286 37.4
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 8.4e-42 174.9 145 61.4
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.4e-41 174.1 275 41.5
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 5.4e-41 172.2 219 48.9
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 7.1e-41 171.8 232 43.1
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.1e-36 157.9 283 35.7
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.4e-36 157.5 173 47.4
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 2.9e-34 149.8 91 84.6
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 8.4e-34 148.3 172 48.3
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 6.2e-29 132.1 80 73.8
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.2e-27 127.9 80 75.0
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.6e-27 126.7 160 43.8
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.2e-25 119.8 149 44.3
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 3.2e-25 119.8 81 72.8
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 6.1e-24 115.5 78 69.2
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 7.9e-24 115.2 133 49.6
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.0e-23 114.8 77 67.5
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 2.3e-23 113.6 162 42.0
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 9.7e-22 108.2 80 58.8
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 9.7e-22 108.2 68 70.6
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.8e-21 106.7 75 62.7
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 6.3e-21 105.5 185 36.2
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 2.6e-19 100.1 233 29.6
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 3.4e-19 99.8 78 59.0
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.9e-17 94.0 99 51.5
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 7.2e-17 92.0 114 48.2
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-15 87.8 55 67.3
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.5e-14 83.6 83 55.4
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 5.7e-14 82.4 80 53.8
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 4.8e-13 79.3 89 50.6
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.2e-11 74.7 70 58.6
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 1.2e-11 74.7 54 64.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.0e-11 73.9 318 26.1
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 5.0e-10 69.3 79 41.8
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-09 67.8 57 63.2
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.2e-09 66.2 65 56.9
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 4.2e-09 66.2 124 36.3
AUR62037909 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.4e-06 55.5 55 56.4


User provided reference genes

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