Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 8.7e-38 159.8 82 100.0
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 2.0e-34 148.7 82 92.7
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 3.8e-33 144.4 84 91.7
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 7.8e-31 136.7 84 86.9
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 2.3e-30 135.2 82 82.9
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 1.3e-28 129.4 85 81.2
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 1.3e-28 129.4 85 82.4
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 5.3e-27 124.0 86 79.1
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 5.3e-27 124.0 86 79.1
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 5.3e-27 124.0 86 79.1
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 5.3e-27 124.0 86 79.1
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 9.9e-26 119.8 84 76.2
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 2.1e-23 112.1 92 68.5
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 1.9e-21 105.5 88 69.3
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 2.5e-21 105.1 87 63.2
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 4.3e-21 104.4 79 73.4
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 4.3e-21 104.4 87 67.8
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 1.1e-19 99.8 64 78.1
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 1.4e-19 99.4 74 70.3
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 1.8e-19 99.0 84 63.1
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 1.8e-19 99.0 88 60.2
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 3.1e-19 98.2 77 67.5
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 4.0e-19 97.8 85 63.5
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 4.0e-19 97.8 83 61.4
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 5.3e-19 97.4 68 72.1
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 6.9e-19 97.1 83 62.7
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 9.0e-19 96.7 73 71.2
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 1.2e-18 96.3 80 65.0
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.2e-18 96.3 72 73.6
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 1.5e-18 95.9 80 63.8
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 1.5e-18 95.9 84 63.1
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 2.0e-18 95.5 85 62.4
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 2.0e-18 95.5 61 73.8
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 2.0e-18 95.5 86 62.8
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 2.6e-18 95.1 85 61.2
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 3.4e-18 94.7 84 61.9
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 3.4e-18 94.7 63 74.6
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 4.5e-18 94.4 80 66.2
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 5.8e-18 94.0 63 74.6
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 7.6e-18 93.6 88 59.1
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 1.0e-17 93.2 71 67.6
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 1.3e-17 92.8 73 64.4
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 1.3e-17 92.8 77 66.2
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 1.3e-17 92.8 75 64.0
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 1.3e-17 92.8 63 73.0
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 1.3e-17 92.8 81 60.5
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 1.7e-17 92.4 83 60.2
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 2.9e-17 91.7 72 62.5
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 2.9e-17 91.7 73 67.1
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.9e-17 91.7 63 73.0
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.9e-17 91.7 63 73.0
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 2.9e-17 91.7 80 65.0
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 2.9e-17 91.7 84 60.7
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 3.8e-17 91.3 87 58.6
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 4.9e-17 90.9 63 71.4
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 4.9e-17 90.9 63 69.8
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 6.5e-17 90.5 73 61.6
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 6.5e-17 90.5 72 61.1
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 6.5e-17 90.5 80 65.0
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 8.4e-17 90.1 63 71.4
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.1e-16 89.7 63 71.4
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 1.1e-16 89.7 63 71.4
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 1.1e-16 89.7 85 58.8
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 1.1e-16 89.7 86 62.8
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 1.9e-16 89.0 63 68.3
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 1.9e-16 89.0 75 62.7
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 1.9e-16 89.0 73 65.8
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 2.5e-16 88.6 65 66.2
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 4.2e-16 87.8 83 60.2
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 4.2e-16 87.8 63 69.8
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 4.2e-16 87.8 82 61.0
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 7.1e-16 87.0 72 61.1
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 7.1e-16 87.0 67 68.7
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 9.3e-16 86.7 73 61.6
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 9.3e-16 86.7 75 58.7
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 1.2e-15 86.3 61 70.5
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 1.2e-15 86.3 79 58.2
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 2.1e-15 85.5 79 63.3
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 2.1e-15 85.5 83 60.2
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 3.5e-15 84.7 83 59.0
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 4.6e-15 84.3 76 60.5
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 7.9e-15 83.6 82 53.7
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 2.3e-14 82.0 63 61.9
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 3.0e-14 81.6 63 65.1
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 3.0e-14 81.6 74 59.5
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 6.7e-14 80.5 71 60.6
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 2.5e-13 78.6 50 72.0
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 2.5e-13 78.6 47 76.6
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 3.3e-13 78.2 46 78.3
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 1.6e-12 75.9 48 68.8
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.4e-11 72.8 59 59.3
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 1.4e-11 72.8 72 48.6
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 2.6e-10 68.6 49 61.2
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 1.9e-08 62.4 43 65.1
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 9.3e-08 60.1 72 43.1
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 6.7e-06 53.9 48 50.0


User provided reference genes

Program Settings