Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 2.7e-158 562.0 289 100.0
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 5.1e-141 504.6 291 90.4
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 5.4e-135 484.6 288 85.4
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 8.1e-131 470.7 289 83.7
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 6.8e-130 467.6 289 83.0
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 6.8e-130 467.6 289 83.0
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 6.8e-130 467.6 289 83.4
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 2.0e-129 466.1 290 83.1
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 2.4e-127 459.1 289 82.0
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 3.2e-127 458.8 289 82.0
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 3.2e-127 458.8 289 82.0
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 3.2e-127 458.8 289 82.0
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 2.7e-110 402.5 291 74.9
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 7.4e-92 341.3 296 64.2
BcaB06g28781 Brassica carinata HOM05D008587 ORTHO05D010485 1.5e-60 237.3 210 64.8
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 2.0e-41 173.7 239 45.6
BolC4t27854H Brassica oleracea HOM05D008587 ORTHO05D010485 2.3e-40 170.2 128 70.3
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 2.7e-33 146.7 236 38.1
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 1.5e-31 141.0 255 42.0
Gorai.010G166500 Gossypium raimondii HOM05D008587 ORTHO05D010485 9.5e-31 138.3 258 41.1
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 2.1e-30 137.1 229 40.6
Gohir.D06G142700 Gossypium hirsutum HOM05D008587 ORTHO05D010485 1.1e-29 134.8 258 40.7
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 4.4e-28 129.4 230 40.4
Gohir.A06G137500 Gossypium hirsutum HOM05D008587 ORTHO05D010485 4.4e-28 129.4 269 37.5
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 3.9e-24 116.3 275 32.4
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 3.9e-24 116.3 285 34.7
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 5.1e-24 115.9 269 32.3
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 6.6e-24 115.5 232 38.4
TWI73G0974 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 1.1e-23 114.8 274 35.0
Duzib235G1124 Durio zibethinus HOM05D008587 ORTHO05D010485 1.9e-23 114.0 316 32.6
Haze_05596 Corylus avellana HOM05D008587 ORTHO05D010485 2.1e-22 110.5 228 38.2
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 6.2e-22 109.0 221 38.9
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 2.3e-21 107.1 232 38.8
Cfa000945 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.5e-20 104.4 227 37.9
Thecc.06G150600 Theobroma cacao HOM05D008587 ORTHO05D010485 2.9e-19 100.1 240 37.1
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 1.9e-18 97.4 192 31.8
Haze_05597 Corylus avellana HOM05D008587 ORTHO05D010485 1.2e-17 94.7 258 34.1
RcHm_v2.0_Chr5g0014151 Rosa chinensis HOM05D014465 ORTHO05D010485 1.9e-15 87.4 226 33.2
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 4.3e-15 86.3 233 29.6
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 5.6e-15 85.9 230 29.1
FvH4_3g05550 Fragaria vesca HOM05D014465 ORTHO05D010485 9.6e-15 85.1 233 30.0
CiPaw.09G123600 Carya illinoinensis HOM05D008587 ORTHO05D010485 1.2e-14 84.7 203 32.5
COL.COLO4_31072 Corchorus olitorius HOM05D008587 ORTHO05D010485 1.2e-14 84.7 290 32.4
Cfa000943 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.1e-13 81.6 176 33.0
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 1.1e-13 81.6 115 40.0
RcHm_v2.0_Chr5g0014161 Rosa chinensis HOM05D014465 ORTHO05D010485 6.8e-13 79.0 229 31.0
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 7.6e-12 75.5 155 36.8
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 2.9e-11 73.6 161 32.9
BolC1t05877H Brassica oleracea HOM05D008587 ORTHO05D010485 3.8e-11 73.2 39 92.3
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 3.8e-11 73.2 116 34.5
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 2.7e-09 67.0 105 39.0
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 7.8e-09 65.5 105 39.0
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 1.0e-08 65.1 102 37.3
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 1.0e-08 65.1 90 42.2
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 2.3e-08 63.9 94 42.6
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 2.3e-08 63.9 116 37.1
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 3.0e-08 63.5 90 36.7
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 3.0e-08 63.5 104 36.5
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 6.6e-08 62.4 158 32.9
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 8.7e-08 62.0 144 33.3
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 8.7e-08 62.0 117 38.5
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 1.1e-07 61.6 158 30.4
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 1.1e-07 61.6 158 32.9
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 1.1e-07 61.6 113 35.4
Lalb_Chr07g0188571 Lupinus albus HOM05D018405 ORTHO05D010485 1.5e-07 61.2 239 28.5
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 1.9e-07 60.8 144 31.9
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 2.5e-07 60.5 90 42.2
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 2.5e-07 60.5 122 36.1
MELO3C035710.2 Cucumis melo HOM05D030426 ORTHO05D029164 4.3e-07 59.7 128 30.5
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 4.3e-07 59.7 110 40.0
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 4.3e-07 59.7 143 32.9
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 5.6e-07 59.3 144 31.2
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 5.6e-07 59.3 64 42.2
CsaV3_1G032450 Cucumis sativus L. HOM05D030426 ORTHO05D029164 7.3e-07 58.9 109 34.9
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 7.3e-07 58.9 115 36.5
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 7.3e-07 58.9 120 35.8
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 7.3e-07 58.9 116 34.5
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 9.6e-07 58.5 143 33.6
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 1.3e-06 58.2 92 39.1
FAN25G0862 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.3e-06 58.2 262 26.3
FAN25G2871 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.3e-06 58.2 262 26.3
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 1.6e-06 57.8 116 33.6
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 2.1e-06 57.4 109 35.8
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 2.1e-06 57.4 91 40.7
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.8e-06 57.0 60 45.0
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 2.8e-06 57.0 144 30.6
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 2.8e-06 57.0 87 34.5
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 3.6e-06 56.6 105 33.3
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 3.6e-06 56.6 129 30.2
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 3.6e-06 56.6 116 35.3
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 3.6e-06 56.6 122 37.7
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 6.2e-06 55.8 106 32.1
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 6.2e-06 55.8 142 31.7


User provided reference genes

Program Settings