Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 6.5e-85 317.4 165 100.0
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 6.3e-80 300.8 165 95.2
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 6.1e-75 284.3 165 89.1
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 3.8e-69 265.0 165 83.0
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 2.3e-66 255.8 169 81.1
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 3.4e-65 251.9 170 79.4
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 1.1e-60 236.9 166 76.5
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 1.9e-60 236.1 165 77.6
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 1.9e-60 236.1 165 77.6
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 1.9e-60 236.1 165 77.6
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 1.2e-59 233.4 165 77.0
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 1.2e-59 233.4 165 77.0
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 2.8e-59 232.3 165 75.2
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 3.6e-59 231.9 165 75.2
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 3.6e-59 231.9 165 75.2
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 4.4e-57 224.9 165 73.9
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 1.3e-56 223.4 165 73.9
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 7.0e-55 217.6 155 76.1
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 1.2e-41 173.7 164 60.4
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 5.4e-39 164.9 98 82.7
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 7.1e-39 164.5 98 82.7
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 7.1e-39 164.5 98 81.6
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 4.6e-38 161.8 98 78.6
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-36 157.1 98 79.6
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-36 157.1 98 79.6
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-36 157.1 98 79.6
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 4.3e-36 155.2 116 69.8
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 4.3e-36 155.2 98 78.6
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 8.9e-34 147.5 143 55.9
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.6e-33 146.0 96 72.9
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.6e-33 146.0 96 72.9
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 4.4e-33 145.2 162 50.0
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.3e-32 143.7 104 67.3
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 1.7e-32 143.3 97 71.1
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 2.9e-32 142.5 98 70.4
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 2.9e-32 142.5 96 69.8
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 2.9e-32 142.5 87 80.5
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 3.8e-32 142.1 96 69.8
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 3.8e-32 142.1 95 69.5
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 3.8e-32 142.1 96 70.8
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 3.8e-32 142.1 96 70.8
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 3.8e-32 142.1 96 70.8
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 3.8e-32 142.1 160 51.9
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 6.4e-32 141.4 87 79.3
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 8.4e-32 141.0 98 70.4
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 8.4e-32 141.0 98 70.4
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.4e-31 140.2 104 66.3
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.4e-31 140.2 104 66.3
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.9e-31 139.8 97 69.1
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.9e-31 139.8 97 69.1
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 1.9e-31 139.8 97 69.1
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 5.4e-31 138.3 96 70.8
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 9.3e-31 137.5 100 66.0
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 1.2e-30 137.1 117 59.8
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 1.6e-30 136.7 101 64.4
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.1e-30 136.3 98 66.3
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 3.5e-30 135.6 80 81.2
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 7.8e-30 134.4 100 64.0
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 7.8e-30 134.4 96 68.8
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 1.3e-29 133.7 97 68.0
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.3e-29 132.9 95 66.3
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.3e-29 132.9 95 66.3
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.3e-29 132.9 95 66.3
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 2.3e-29 132.9 98 66.3
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 3.9e-29 132.1 98 66.3
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 3.9e-29 132.1 98 66.3
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 3.9e-29 132.1 96 67.7
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 3.9e-29 132.1 100 64.0
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 5.1e-29 131.7 98 67.3
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 5.1e-29 131.7 96 65.6
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 6.6e-29 131.3 88 72.7
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 6.6e-29 131.3 96 64.6
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 8.7e-29 131.0 86 72.1
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 8.7e-29 131.0 96 65.6
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 1.1e-28 130.6 103 62.1
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 1.1e-28 130.6 98 64.3
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.5e-28 129.4 97 66.0
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 2.5e-28 129.4 97 66.0
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 1.6e-27 126.7 97 66.0
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.1e-27 126.3 97 64.9
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.8e-27 125.9 92 66.3
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 2.8e-27 125.9 97 64.9
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 3.6e-27 125.6 97 64.9
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 6.2e-27 124.8 97 62.9
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.1e-27 124.4 91 63.7
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 1.1e-26 124.0 93 64.5
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 1.1e-26 124.0 93 64.5
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 1.4e-26 123.6 97 63.9
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 5.8e-25 118.2 97 63.9
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 3.2e-23 112.5 75 73.3
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 3.2e-23 112.5 98 55.1
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 9.3e-23 110.9 71 74.6
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 3.5e-22 109.0 79 65.8
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.5e-22 109.0 79 65.8
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 1.8e-21 106.7 62 80.6
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 8.7e-21 104.4 63 81.0
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 4.3e-20 102.1 70 71.4
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 7.4e-20 101.3 71 71.8
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-19 100.5 63 79.4
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-19 100.5 63 79.4
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.4e-18 97.1 82 58.5
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 3.1e-18 95.9 70 64.3
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.5e-17 93.6 63 71.4
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.5e-17 92.0 60 73.3
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 2.2e-16 89.7 66 66.7
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 1.1e-15 87.4 93 50.5
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 1.4e-15 87.0 57 73.7
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.3e-13 80.5 56 73.2
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 5.1e-13 78.6 52 71.2
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 1.5e-12 77.0 101 43.6
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.1e-10 70.9 71 56.3
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 1.1e-10 70.9 53 62.3
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.1e-10 69.3 48 70.8
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 2.0e-09 66.6 42 71.4
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 7.6e-09 64.7 37 81.1
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 7.6e-09 64.7 39 74.4
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 7.9e-06 54.7 94 39.4


User provided reference genes

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