Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G34220 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 0.0e+00 1496.1 754 100.0
Carub.0004s1585 Capsella rubella HOM05D003941 ORTHO05D012174 5.1e-310 1067.4 719 75.4
AL4G30160 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 1.3e-281 973.0 715 70.3
AL4G30170 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 2.7e-279 965.3 723 70.5
AL4G30150 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 4.1e-259 898.3 724 67.0
CARHR128330 Cardamine hirsuta HOM05D003941 ORTHO05D012174 9.1e-251 870.5 733 62.6
AT2G34240 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 1.7e-249 866.3 706 65.6
CARHR128320 Cardamine hirsuta HOM05D003941 ORTHO05D012174 4.4e-237 825.1 730 59.9
AT2G34230 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 2.1e-231 806.2 657 63.9
Carub.0004s1590 Capsella rubella HOM05D003941 ORTHO05D012174 1.1e-230 803.9 705 61.8
Carub.0004s1586 Capsella rubella HOM05D003941 ORTHO05D012174 5.2e-214 748.4 723 58.0
Thhalv10017593m.g Eutrema salsugineum HOM05D003941 ORTHO05D012174 8.7e-209 731.1 733 54.7
Thhalv10017837m.g Eutrema salsugineum HOM05D003941 ORTHO05D012174 1.3e-204 717.2 726 54.1
Carub.0004s1588 Capsella rubella HOM05D003941 ORTHO05D012174 1.4e-203 713.8 709 56.6
BolC4t23064H Brassica oleracea HOM05D003941 ORTHO05D012174 4.2e-203 712.2 705 55.2
C04p14900 Brassica napus HOM05D003941 ORTHO05D012174 1.2e-202 710.7 701 55.2
BcaC02g11483 Brassica carinata HOM05D003941 ORTHO05D012174 1.4e-190 670.6 736 51.9
A05p11410 Brassica napus HOM05D003941 ORTHO05D012174 1.1e-150 538.1 566 52.8
BraA05t20090Z Brassica rapa HOM05D003941 ORTHO05D012174 1.1e-139 501.5 568 51.1
BcaB02g09553 Brassica carinata HOM05D003941 ORTHO05D012174 4.5e-133 479.6 431 56.1
BcaC02g11482 Brassica carinata HOM05D003941 ORTHO05D012174 8.6e-116 422.2 428 51.9
THA.LOC104821900 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 8.6e-100 369.0 718 35.5
THA.LOC104821885 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 2.4e-97 360.9 724 32.9
THA.LOC104805708 Tarenaya hassleriana HOM05D003941 ORTHO05D002286 1.5e-80 305.1 732 31.0
AL2G19870 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 8.7e-76 289.3 759 28.5
THA.LOC104825520 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 7.6e-72 276.2 705 29.5
AT1G65130 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 1.7e-71 275.0 690 29.7
Carub.0002s1060 Capsella rubella HOM05D003941 ORTHO05D009447 6.5e-71 273.1 723 29.2
AT1G65110 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 4.2e-70 270.4 701 29.2
AL2G19970 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 1.2e-69 268.9 712 29.2
AT1G65120 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 1.5e-67 261.9 766 27.4
CARHR056610 Cardamine hirsuta HOM05D003941 ORTHO05D009447 7.4e-67 259.6 699 28.3
Sp3g03240 Schrenkiella parvula HOM05D003941 ORTHO05D009447 1.6e-66 258.5 710 28.2
Carub.0002s1057 Capsella rubella HOM05D003941 ORTHO05D009447 2.1e-66 258.1 686 28.3
Carub.0002s1065 Capsella rubella HOM05D003941 ORTHO05D009447 2.8e-66 257.7 700 28.7
AL2G19840 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 3.7e-66 257.3 711 28.1
AL2G20130 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 4.8e-66 256.9 704 29.5
Carub.0002s1061 Capsella rubella HOM05D003941 ORTHO05D009447 3.1e-65 254.2 691 28.8
Thhalv10019959m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 3.1e-65 254.2 718 27.6
SpUn0054_0050 Schrenkiella parvula HOM05D003941 ORTHO05D009447 9.0e-65 252.7 718 27.7
CARHR120250 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.4e-64 250.8 718 27.7
CARHR038560 Cardamine hirsuta HOM05D003941 ORTHO05D009447 2.9e-63 247.7 715 27.7
CARHR056760 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.8e-63 247.3 713 28.5
A02p13070 Brassica napus HOM05D003941 ORTHO05D009447 5.0e-63 246.9 716 27.7
CARHR056630 Cardamine hirsuta HOM05D003941 ORTHO05D009447 5.0e-63 246.9 733 28.8
THA.LOC104821865 Tarenaya hassleriana HOM05D003941 ORTHO05D009447 5.0e-63 246.9 689 29.3
AT1G52450 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 8.4e-63 246.1 733 28.1
Aa31LG2G2340 Aethionema arabicum HOM05D003941 ORTHO05D009447 1.1e-62 245.7 742 28.8
AL8G38700 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 1.9e-62 245.0 712 28.2
BolC5t34939H Brassica oleracea HOM05D003941 ORTHO05D009447 3.2e-62 244.2 736 27.3
AT1G65200 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 4.2e-62 243.8 706 28.2
BcaC05g29948 Brassica carinata HOM05D003941 ORTHO05D009447 4.2e-62 243.8 747 27.4
Aa31LG2G2310 Aethionema arabicum HOM05D003941 ORTHO05D009447 9.3e-62 242.7 679 28.1
BraA02t06363Z Brassica rapa HOM05D003941 ORTHO05D009447 1.6e-61 241.9 724 27.8
AT5G61940 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.1e-61 241.5 765 26.8
AT1G52430 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 4.6e-61 240.4 715 28.1
AL2G20180 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 1.0e-60 239.2 702 28.5
BolC2t08261H Brassica oleracea HOM05D003941 ORTHO05D009447 1.3e-60 238.8 717 28.5
BcaC03g14681 Brassica carinata HOM05D003941 ORTHO05D009447 1.8e-60 238.4 695 28.5
Carub.0002s1066 Capsella rubella HOM05D003941 ORTHO05D009447 2.3e-60 238.0 720 28.5
BcaC05g30202 Brassica carinata HOM05D003941 ORTHO05D009447 5.1e-60 236.9 732 26.2
Carub.0004s0831 Capsella rubella HOM05D003941 ORTHO05D009447 5.1e-60 236.9 723 27.0
Thhalv10005669m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 1.5e-59 235.3 718 26.9
C05p62840 Brassica napus HOM05D003941 ORTHO05D009447 3.3e-59 234.2 715 27.3
AT2G27650 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 9.7e-59 232.6 720 26.8
A05p43100 Brassica napus HOM05D003941 ORTHO05D009447 9.7e-59 232.6 728 27.1
CARHR275730 Cardamine hirsuta HOM05D003941 ORTHO05D009447 9.7e-59 232.6 696 28.0
BcaC05g30233 Brassica carinata HOM05D003941 ORTHO05D009447 1.3e-58 232.3 680 26.8
Thhalv10005405m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 1.3e-58 232.3 715 27.7
AT5G51530 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 1.6e-58 231.9 706 27.5
C02p21210 Brassica napus HOM05D003941 ORTHO05D009447 1.6e-58 231.9 737 27.7
BraA05t23053Z Brassica rapa HOM05D003941 ORTHO05D009447 1.6e-58 231.9 696 27.7
Thhalv10005598m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 3.7e-58 230.7 715 27.1
Carub.0008s2262 Capsella rubella HOM05D003941 ORTHO05D009447 5.3e-57 226.9 681 28.2
AL8G38710 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 9.0e-57 226.1 702 27.6
CARHR275710 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.2e-56 225.7 735 27.1
A05p43090 Brassica napus HOM05D003941 ORTHO05D009447 1.3e-55 222.2 690 27.4
Carub.0008s2263 Capsella rubella HOM05D003941 ORTHO05D009447 1.7e-55 221.9 708 27.1
AL4G22760 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 2.2e-55 221.5 697 26.4
Carub.0001s4142 Capsella rubella HOM05D003941 ORTHO05D009447 2.2e-55 221.5 731 26.3
AT5G61950 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.5e-54 218.0 720 26.4
CARHR275720 Cardamine hirsuta HOM05D003941 ORTHO05D009447 4.2e-54 217.2 701 28.1
BcaB05g24095 Brassica carinata HOM05D003941 ORTHO05D009447 9.4e-54 216.1 716 27.2
Sp2g25130 Schrenkiella parvula HOM05D003941 ORTHO05D009447 2.1e-53 214.9 727 26.0
BolC2t08263H Brassica oleracea HOM05D003941 ORTHO05D009447 7.9e-53 213.0 703 26.9
CARHR120240 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.4e-52 212.2 693 26.6
BraA02t06365Z Brassica rapa HOM05D003941 ORTHO05D009447 1.8e-52 211.8 703 26.6
A02p13090 Brassica napus HOM05D003941 ORTHO05D009447 2.3e-52 211.5 703 26.5
BcaC03g14683 Brassica carinata HOM05D003941 ORTHO05D009447 5.1e-52 210.3 701 26.5
BcaB05g24093 Brassica carinata HOM05D003941 ORTHO05D009447 8.8e-52 209.5 688 27.5
Carub.0008s2264 Capsella rubella HOM05D003941 ORTHO05D009447 2.2e-50 204.9 715 26.3
AT2G27630 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 3.7e-50 204.1 694 25.2
Carub.0004s0829 Capsella rubella HOM05D003941 ORTHO05D009447 3.7e-50 204.1 722 26.2
CARHR056640 Cardamine hirsuta HOM05D003941 ORTHO05D009447 6.3e-50 203.4 518 29.2
Carub.0006s0157 Capsella rubella HOM05D003941 ORTHO05D009447 8.2e-50 203.0 685 25.5
C02p21230 Brassica napus HOM05D003941 ORTHO05D009447 1.1e-49 202.6 726 26.0
BcaC03g18108 Brassica carinata HOM05D003941 ORTHO05D009447 1.5e-48 198.7 537 27.7
C02p61760 Brassica napus HOM05D003941 ORTHO05D009447 4.5e-48 197.2 668 26.9
BolC2t12229H Brassica oleracea HOM05D003941 ORTHO05D009447 7.7e-48 196.4 745 25.6
A02p41830 Brassica napus HOM05D003941 ORTHO05D009447 1.0e-47 196.1 665 26.9
BraA02t09120Z Brassica rapa HOM05D003941 ORTHO05D009447 3.2e-46 191.0 739 25.6
BcaC05g30201 Brassica carinata HOM05D003941 ORTHO05D009447 6.7e-44 183.3 528 28.4
BcaC03g18102 Brassica carinata HOM05D003941 ORTHO05D009447 8.2e-42 176.4 731 24.8
A02p41750 Brassica napus HOM05D003941 ORTHO05D009447 1.8e-41 175.3 722 25.1
BolC2t12225H Brassica oleracea HOM05D003941 ORTHO05D009447 1.6e-40 172.2 733 24.7
A02p41820 Brassica napus HOM05D003941 ORTHO05D009447 4.5e-40 170.6 471 27.8
BraA02t09115Z Brassica rapa HOM05D003941 ORTHO05D009447 5.9e-40 170.2 727 24.5
C02p61670 Brassica napus HOM05D003941 ORTHO05D009447 1.3e-39 169.1 720 24.6
CARHR056680 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.7e-34 152.1 371 29.1
AT5G02660 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 1.2e-32 146.0 523 26.4
CARHR038520 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.5e-24 117.9 365 26.3
AT3G47910 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 2.4e-17 95.1 616 21.9
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 1.0e-15 89.7 632 19.8
ATR1153G111 Amborella trichopoda HOM05D001961 ORTHO05D002286 3.8e-15 87.8 615 20.2
AL5G27230 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 3.3e-14 84.7 452 23.5
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 4.3e-14 84.3 495 20.2
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 9.5e-14 83.2 635 20.8
COL.COLO4_35465 Corchorus olitorius HOM05D001961 ORTHO05D002286 1.2e-13 82.8 340 22.1
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 1.6e-13 82.4 340 23.2
Ah.11g048820 Amaranthus hybridus HOM05D001961 ORTHO05D002286 2.8e-13 81.6 587 19.6
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 2.8e-13 81.6 618 19.6
MD14G1192000 Malus domestica HOM05D001961 ORTHO05D002286 2.8e-13 81.6 349 23.8
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 2.8e-13 81.6 343 23.9
Ciclev10007036m.g Citrus clementina HOM05D001961 ORTHO05D002286 6.1e-13 80.5 569 21.1
Duzib068G1318 Durio zibethinus HOM05D001961 ORTHO05D002286 1.0e-12 79.7 345 23.8
Ah.02g113120 Amaranthus hybridus HOM05D001961 ORTHO05D002286 1.4e-12 79.3 535 22.6
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 1.8e-12 79.0 342 22.5
Cfa009758 Carpinus fangiana HOM05D001961 ORTHO05D002286 3.0e-12 78.2 735 19.5
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 3.0e-12 78.2 342 22.5
GSVIVG01008079001 Vitis vinifera HOM05D001961 ORTHO05D002286 4.0e-12 77.8 535 19.8
MBI04_g20664_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 5.2e-12 77.4 531 22.2
arahy.Tifrunner.gnm1.ann1.LMB17M Arachis hypogaea HOM05D001961 ORTHO05D002286 8.9e-12 76.6 341 21.4
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 8.9e-12 76.6 636 19.8
Duzib205G1945 Durio zibethinus HOM05D001961 ORTHO05D002286 2.0e-11 75.5 341 22.0
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 2.0e-11 75.5 638 20.1
Cfa021166 Carpinus fangiana HOM05D001961 ORTHO05D002286 2.6e-11 75.1 735 19.9
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 2.6e-11 75.1 346 20.8
HanXRQChr05g0155261 Helianthus annuus HOM05D001961 ORTHO05D002286 2.6e-11 75.1 530 21.3
CSS0004686 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.4e-11 74.3 437 21.7
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 5.7e-11 73.9 331 23.3
arahy.Tifrunner.gnm1.ann1.DV6TYS Arachis hypogaea HOM05D001961 ORTHO05D002286 7.5e-11 73.6 341 21.1
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 7.5e-11 73.6 340 21.8
Sed0025522 Sechium edule HOM05D001961 ORTHO05D002286 9.8e-11 73.2 627 19.8
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 1.3e-10 72.8 340 21.8
MD06G1185800 Malus domestica HOM05D001961 ORTHO05D002286 2.9e-10 71.6 343 22.2
CARHR120610 Cardamine hirsuta HOM05D003941 ORTHO05D032292 4.9e-10 70.9 259 25.1
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 4.9e-10 70.9 340 22.1
MBI04_g20665_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 4.9e-10 70.9 550 21.6
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 4.9e-10 70.9 342 21.9
Ciclev10018876m.g Citrus clementina HOM05D001961 ORTHO05D002286 6.4e-10 70.5 696 20.7
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 6.4e-10 70.5 340 22.1
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 8.3e-10 70.1 340 21.2
Actinidia36031 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.1e-09 69.7 567 20.1
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.4e-09 69.3 335 22.7
Dinv33704 Davidia involucrata HOM05D001961 ORTHO05D002286 1.8e-09 68.9 492 22.4
A03p00920 Brassica napus HOM05D021944 ORTHO05D024454 2.4e-09 68.6 262 24.0
Lalb_Chr12g0201211 Lupinus albus HOM05D001961 ORTHO05D002286 2.4e-09 68.6 341 19.9
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 2.4e-09 68.6 351 21.1
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 3.2e-09 68.2 335 23.9
BraA03t09474Z Brassica rapa HOM05D021944 ORTHO05D024454 5.4e-09 67.4 263 24.7
PSO161G0075 Papaver somniferum HOM05D001961 ORTHO05D002286 5.4e-09 67.4 453 19.0
FAN08G2604 Fragaria x ananassa HOM05D001961 ORTHO05D002286 7.0e-09 67.0 335 22.4
FAN18G4418 Fragaria x ananassa HOM05D001961 ORTHO05D002286 7.0e-09 67.0 594 20.5
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 7.0e-09 67.0 340 21.5
Potri.015G066500 Populus trichocarpa HOM05D001961 ORTHO05D002286 7.0e-09 67.0 343 21.9
SEGI_13866 Sequoiadendron giganteum HOM05D001961 ORTHO05D002286 7.0e-09 67.0 333 23.4
QL10p014874 Quercus lobata HOM05D001961 ORTHO05D002286 1.6e-08 65.9 226 26.5
Aa31LG4G16560 Aethionema arabicum HOM05D001961 ORTHO05D002286 2.7e-08 65.1 364 24.7
PSO478G4671 Papaver somniferum HOM05D001961 ORTHO05D002286 4.6e-08 64.3 374 20.6
Sabra15G0091600 Salix brachista HOM05D001961 ORTHO05D002286 5.9e-08 63.9 343 20.7
Hund02679 Selenicereus undatus HOM05D001961 ORTHO05D002286 7.8e-08 63.5 355 22.0
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 1.0e-07 63.2 348 19.8
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 1.7e-07 62.4 344 21.8
Lj1g0021908 Lotus japonicus HOM05D001961 ORTHO05D002286 1.7e-07 62.4 342 20.2
AUR62021754 Chenopodium quinoa HOM05D001961 ORTHO05D002286 5.0e-07 60.8 306 22.9
PGR083G2262 Punica granatum HOM05D001961 ORTHO05D002286 1.1e-06 59.7 345 21.4
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 1.5e-06 59.3 354 21.8
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 1.9e-06 58.9 370 22.2
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 2.5e-06 58.5 349 20.3
Aqoxy4G02900 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 5.6e-06 57.4 235 21.3
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 7.3e-06 57.0 348 21.6
FvH4_5g15740 Fragaria vesca HOM05D001961 ORTHO05D002286 7.3e-06 57.0 332 24.7
QL10p014886 Quercus lobata HOM05D001961 ORTHO05D002286 7.3e-06 57.0 284 22.5


User provided reference genes

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